Commit e559fb6d authored by Paul McCarthy's avatar Paul McCarthy 🚵
Browse files

DOC: Update examples

parent 38f82245
......@@ -90,20 +90,28 @@ internal_channel: http://${FSLCONDA_USERNAME}:${FSLCONDA_PASSWORD}@https://fsl.f
# The FSL installation is created in two stages.
# First of all, the base_packages are installed.
# Versions of these packages are specified in
# the packages list below
base_packages:
- fsl-base 2109.1
- fsl-sub 2.5.8
- fslpy 3.7.0
- libopenblas 0.3.18 *openmp*
- fsl-base
- fslpy
- fsl-sub
- libopenblas
...
# Then all of these packages are installed
# in the second stage.
# List of all packages that comprise a FSL
# installation. All packages not installed
# in the first stage (see base_packages
# above) are installed in the second stage.
packages:
- ciftilib 1.5.3
- fsleyes 1.3.0
- fslpy 3.7.0
- fsl-avwutils 2007.0
- fsl-base 2109.1
- fsl-eddy-cpu 2106.0
- fsl-sub 2.5.8
- libopenblas 0.3.18 *openmp*
...
```
......
......@@ -53,100 +53,110 @@
// Builds available for this version. A build
// entry contains the following fields:
//
// - "platform" Architecture/platform - currently one of
// "linux-64" or "macos-64"
// - "cuda" Version of CUDA that this build was built
// against. MUST NOT be present for non-CUDA
// builds.
// - "environment" Conda environment.yml file
// - "sha256" SHA256 checksum of environment.yml file
// - "output" Dictionary containing number of lines of
// output to expect when installing the FSL
// environment ("install" : "100"), or when
// updating from an older FSL installation
// (e.g. "6.1.0" : "50") - used to report
// progress to the user.
// - "platform" Architecture/platform - currently one of
// "linux-64" or "macos-64"
// - "cuda" Version of CUDA that this build was built
// against. MUST NOT be present for non-CUDA
// builds.
// - "environment" Conda environment.yml file
// - "sha256" SHA256 checksum of environment.yml file
// - "base_packages" List of "base" packages, which are
// installed before all other packages.
// - "output" Dictionary containing number of lines of
// output to expect when installing the FSL
// environment ("install" : "100"), or when
// updating from an older FSL installation
// (e.g. "6.1.0" : "50") - used to report
// progress to the user.
"6.1.0" : [
{
"platform" : "linux-64",
"environment" : "https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/fsl-6.1.0-linux-64.yml",
"sha256" : "952a0101fc19948e785572f8c06436c59f19c4ef92df9425f2e2033d4b986918",
"output" : {
"install" : "92",
"6.0.6" : "11"
"platform" : "linux-64",
"environment" : "https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/fsl-6.1.0-linux-64.yml",
"sha256" : "952a0101fc19948e785572f8c06436c59f19c4ef92df9425f2e2033d4b986918",
"base_packages" : ["fsl-base", "libopenblas", "fslpy"],
"output" : {
"install" : "92",
"6.0.6" : "11"
}
},
{
"platform" : "macos-64",
"environment" : "https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/fsl-6.1.0-macos-64.yml",
"sha256" : "952a0101fc19948e785572f8c06436c59f19c4ef92df9425f2e2033d4b986918",
"output" : {
"install" : "92",
"6.0.6" : "11"
"platform" : "macos-64",
"environment" : "https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/fsl-6.1.0-macos-64.yml",
"sha256" : "952a0101fc19948e785572f8c06436c59f19c4ef92df9425f2e2033d4b986918",
"base_packages" : ["fsl-base", "libopenblas", "fslpy"],
"output" : {
"install" : "92",
"6.0.6" : "11"
}
},
{
"platform" : "linux-64",
"cuda" : "9.2",
"environment" : "https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/fsl-6.1.0-linux-64-cuda9.2.yml",
"sha256" : "952a0101fc19948e785572f8c06436c59f19c4ef92df9425f2e2033d4b986918",
"output" : {
"install" : "92",
"6.0.6" : "11"
"platform" : "linux-64",
"cuda" : "9.2",
"environment" : "https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/fsl-6.1.0-linux-64-cuda9.2.yml",
"sha256" : "952a0101fc19948e785572f8c06436c59f19c4ef92df9425f2e2033d4b986918",
"base_packages" : ["fsl-base", "libopenblas", "fslpy"],
"output" : {
"install" : "92",
"6.0.6" : "11"
}
},
{
"platform" : "linux-64",
"cuda" : "10.2",
"environment" : "https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/fsl-6.1.0-linux-64-cuda10.2.yml",
"sha256" : "85ef650586c1d7f3475fe7d16108bb94b737decbfc7506ad4deff2917365d05f",
"output" : {
"install" : "92",
"6.0.6" : "11"
"platform" : "linux-64",
"cuda" : "10.2",
"environment" : "https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/fsl-6.1.0-linux-64-cuda10.2.yml",
"sha256" : "85ef650586c1d7f3475fe7d16108bb94b737decbfc7506ad4deff2917365d05f",
"base_packages" : ["fsl-base", "libopenblas", "fslpy"],
"output" : {
"install" : "92",
"6.0.6" : "11"
}
}
],
"6.2.0" : [
{
"platform" : "linux-64",
"environment" : "https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/fsl-6.2.0-linux-64.yml",
"sha256" : "952a0101fc19948e785572f8c06436c59f19c4ef92df9425f2e2033d4b986918",
"output" : {
"install" : "92",
"6.0.6" : "11",
"6.1.0" : "11"
"platform" : "linux-64",
"environment" : "https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/fsl-6.2.0-linux-64.yml",
"sha256" : "952a0101fc19948e785572f8c06436c59f19c4ef92df9425f2e2033d4b986918",
"base_packages" : ["fsl-base", "libopenblas", "fslpy"],
"output" : {
"install" : "92",
"6.0.6" : "11",
"6.1.0" : "11"
}
},
{
"platform" : "macos-64",
"environment" : "https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/fsl-6.2.0-macos-64.yml",
"sha256" : "952a0101fc19948e785572f8c06436c59f19c4ef92df9425f2e2033d4b986918",
"output" : {
"install" : "92",
"6.0.6" : "11",
"6.1.0" : "11"
"platform" : "macos-64",
"environment" : "https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/fsl-6.2.0-macos-64.yml",
"sha256" : "952a0101fc19948e785572f8c06436c59f19c4ef92df9425f2e2033d4b986918",
"base_packages" : ["fsl-base", "libopenblas", "fslpy"],
"output" : {
"install" : "92",
"6.0.6" : "11",
"6.1.0" : "11"
}
},
{
"platform" : "linux-64",
"cuda" : "9.2",
"environment" : "https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/fsl-6.2.0-linux-64-cuda9.2.yml",
"sha256" : "952a0101fc19948e785572f8c06436c59f19c4ef92df9425f2e2033d4b986918",
"output" : {
"install" : "92",
"6.0.6" : "11",
"6.1.0" : "11"
"platform" : "linux-64",
"cuda" : "9.2",
"environment" : "https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/fsl-6.2.0-linux-64-cuda9.2.yml",
"sha256" : "952a0101fc19948e785572f8c06436c59f19c4ef92df9425f2e2033d4b986918",
"base_packages" : ["fsl-base", "libopenblas", "fslpy"],
"output" : {
"install" : "92",
"6.0.6" : "11",
"6.1.0" : "11"
}
},
{
"platform" : "linux-64",
"cuda" : "10.2",
"environment" : "https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/fsl-6.2.0-linux-64-cuda10.2.yml",
"sha256" : "6499385a2f5d2da48f4a44c95e090a5156319b0acbbd47029d4270abc691a290",
"output" : {
"install" : "92",
"6.0.6" : "11",
"6.1.0" : "11"
"platform" : "linux-64",
"cuda" : "10.2",
"environment" : "https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/fsl-6.2.0-linux-64-cuda10.2.yml",
"sha256" : "6499385a2f5d2da48f4a44c95e090a5156319b0acbbd47029d4270abc691a290",
"base_packages" : ["fsl-base", "libopenblas", "fslpy"],
"output" : {
"install" : "92",
"6.0.6" : "11",
"6.1.0" : "11"
}
}
]
......
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