From 0c383356ffd3f67bba637bc9beccee85e357192e Mon Sep 17 00:00:00 2001
From: Duncan Mortimer <duncan.mortimer@ndcn.ox.ac.uk>
Date: Wed, 18 Jul 2007 15:29:15 +0000
Subject: [PATCH] Now returns exit code 1 on error
---
old_bedpost | 25 +++++++++++++------------
1 file changed, 13 insertions(+), 12 deletions(-)
diff --git a/old_bedpost b/old_bedpost
index ce8e64c..89bff03 100755
--- a/old_bedpost
+++ b/old_bedpost
@@ -13,7 +13,7 @@ Usage() {
echo "expects to find bvals and bvecs in subject directory"
echo "expects to find data nodif_brain_mask nodif in subject directory"
echo ""
- exit
+ exit 1
}
trap Clean_Exit 2
@@ -35,7 +35,7 @@ Clean_Exit(){
rm ${subjdir}.bedpost/logs/pid_${$}/${j}
done
fi
- ExitUnlock;
+ ExitUnlock 1;
}
Lock(){
@@ -45,6 +45,7 @@ Lock(){
}
ExitUnlock(){
+ returncode=$1
if [ -f ${FSLLOCKDIR}/.bedpost.lock ];then
rm ${FSLLOCKDIR}/.bedpost.lock
fi
@@ -60,7 +61,7 @@ ExitUnlock(){
rm -f ${subjdir}/nodif_brain_mask_slice_*
fi
- exit
+ exit $returncode
}
LockTest(){
@@ -92,13 +93,13 @@ make_absolute(){
if [ `LockTest` -eq 0 ]; then
echo "bedpost is currently being run - try again later"
- exit
+ exit 1
fi
if [ "x${FSLMACHINELIST}" != "x" ];then
if [ "x${FSLREMOTECALL}" = "x" ];then
echo "error: you must set FSLREMOTECALL if you have set FSLMACHINELIST"
- exit
+ exit 1
fi
fi
@@ -114,32 +115,32 @@ echo subjectdir is $subjdir
if [ ! -d $subjdir ]; then
echo "subject directory $1 not found"
- ExitUnlock
+ ExitUnlock 1
fi
if [ ! -f ${subjdir}/bvecs ]; then
echo "${subjdir}/bvecs not found"
- ExitUnlock
+ ExitUnlock 1
fi
if [ ! -f ${subjdir}/bvals ]; then
echo "${subjdir}/bvals not found"
- ExitUnlock
+ ExitUnlock 1
fi
if [ `${FSLDIR}/bin/imtest ${subjdir}/data` -eq 0 ]; then
echo "${subjdir}/data not found"
- ExitUnlock
+ ExitUnlock 1
fi
if [ `${FSLDIR}/bin/imtest ${subjdir}/nodif` -eq 0 ]; then
echo "${subjdir}/nodif not found"
- ExitUnlock
+ ExitUnlock 1
fi
if [ `${FSLDIR}/bin/imtest ${subjdir}/nodif_brain_mask` -eq 0 ]; then
echo "${subjdir}/nodif_brain_mask not found"
- ExitUnlock
+ ExitUnlock 1
fi
@@ -228,7 +229,7 @@ echo 0 0 1 0 >> ${xfmdir}/eye.mat
echo 0 0 0 1 >> ${xfmdir}/eye.mat
echo "DONE"
-ExitUnlock
+ExitUnlock 0
--
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