From 0e8a7ef167ab99c46e30bd98d0e31421ea16596a Mon Sep 17 00:00:00 2001
From: Matthew Webster <mwebster@fmrib.ox.ac.uk>
Date: Tue, 1 May 2007 11:57:57 +0000
Subject: [PATCH] saad fixes
---
fdtx.tcl | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/fdtx.tcl b/fdtx.tcl
index 41e67d8..b2435de 100644
--- a/fdtx.tcl
+++ b/fdtx.tcl
@@ -731,7 +731,7 @@ proc fdt:apply { w dialog } {
}
seedmask {
if { $probtrack(bcyn) } {
- fdt_monitor_short $w "${FSLDIR}/bin/flirt -in $probtrack(bedpost_dir)/seed_brain_mask -ref $probtrack(bedpost_dir)/seed_brain_mask -applyisoxfm 5 -out $probtrack(output)/lowresmask"
+ fdt_monitor_short $w "${FSLDIR}/bin/flirt -in $probtrack(bedpost_dir)/nodif_brain_mask -ref $probtrack(bedpost_dir)/nodif_brain_mask -applyisoxfm 5 -out $probtrack(output)/lowresmask"
fdt_monitor_short $w "${FSLDIR}/bin/avwmaths $probtrack(output)/lowresmask -thr 0.5 -bin $probtrack(output)/lowresmask"
set flags "$flags --lrmask=$probtrack(output)/lowresmask --omatrix2"
}
--
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