diff --git a/post_xfibres b/post_xfibres index 43ea191143ca038926888ee0ac55bf3b40b6b5da..7aa66856944c05234f8e6c5df9cf9e6917fb9c67 100755 --- a/post_xfibres +++ b/post_xfibres @@ -20,7 +20,8 @@ numfib=`${FSLDIR}/bin/imglob -oneperimage f*samples |wc -w` echo "$numfib fibres" fib=1; -avwmaths S0samples -mul 0 numfibs +avwroi S0samples numfibs 0 1 +avwmaths numfibs -mul 0 numfibs while [ $fib -le $numfib ];do echo $fib ${FSLDIR}/bin/avwmaths f${fib}samples -Tmean mean_f${fib}samples