From 177ca6f7d65b8fc12e7038158edf4b6046cba110 Mon Sep 17 00:00:00 2001
From: Saad Jbabdi <saad@fmrib.ox.ac.uk>
Date: Fri, 6 Jul 2007 13:43:12 +0000
Subject: [PATCH] corrected small bug in simple mode

---
 probtrackx.cc | 3 ++-
 ptx_simple.cc | 5 +++--
 2 files changed, 5 insertions(+), 3 deletions(-)

diff --git a/probtrackx.cc b/probtrackx.cc
index 9509545..4150d57 100644
--- a/probtrackx.cc
+++ b/probtrackx.cc
@@ -39,7 +39,8 @@ int main ( int argc, char **argv ){
     if(fsl_imageexists(opts.mask2.value())){ twomasks();}
     else{ seedmask(); }
   }
-  else{ nmasks(); }
+  else if(opts.network.value()){ nmasks(); }
+  else {};
 
   //else if(fopen(tmpin.c_str(),"r")!=NULL ){ track();}
 
diff --git a/ptx_simple.cc b/ptx_simple.cc
index 95c1754..418c252 100644
--- a/ptx_simple.cc
+++ b/ptx_simple.cc
@@ -44,10 +44,11 @@ void track(){
     float yst=Seeds(SN,2);
     float zst=Seeds(SN,3);
     keeptot += seedmanager.run(xst,yst,zst,false,0);
-    string add=num2str(Seeds(SN,1))+(string)"_"+num2str(Seeds(SN,2))+(string)"_"+num2str(Seeds(SN,3));
+    string add="_"+num2str(Seeds(SN,1))+(string)"_"+num2str(Seeds(SN,2))+(string)"_"+num2str(Seeds(SN,3));
     
     counter.save_pathdist(add);
     counter.reset_prob();
   } //Close Seed number Loop
-  counter.save_total(keeptot);
+
+  //counter.save_total(keeptot);
 }
-- 
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