From 1d0b5480c5444229de62f59cf2323918c12865c3 Mon Sep 17 00:00:00 2001
From: Saad Jbabdi <saad@fmrib.ox.ac.uk>
Date: Wed, 3 Oct 2007 12:38:39 +0000
Subject: [PATCH] added two options to bedpostx
---
bedpostx | 6 +++++-
1 file changed, 5 insertions(+), 1 deletion(-)
diff --git a/bedpostx b/bedpostx
index fed77b3..92ae204 100755
--- a/bedpostx
+++ b/bedpostx
@@ -50,12 +50,16 @@ echo subjectdir is $subjdir
nfibres=2
fudge=1
burnin=1000
+njumps=1250
+sampleevery=25
while [ ! -z "$2" ]
do
case "$2" in
-n) nfibres=$3;shift;;
-w) fudge=$3;shift;;
-b) burnin=$3;shift;;
+ -j) njumps=$3;shift;;
+ -s) sampleevery=$3;shift;;
*) break;;
esac
shift
@@ -130,7 +134,7 @@ EOM
monitorpid=$!
fi
for ((slice=0; slice < $nslices; slice++)) ; do
- echo "${FSLDIR}/bin/bedpostx_single_slice.sh $subjdir $nfibres $fudge $burnin $slice" \
+ echo "${FSLDIR}/bin/bedpostx_single_slice.sh $subjdir $nfibres $fudge $burnin $njumps $sampleevery $slice" \
>> ${subjdir}.bedpostX/commands.txt
done
bedpostid=`${FSLDIR}/bin/fsl_sub -j $preprocid -l ${subjdir}.bedpostX/logs -M $mailto -N bedpostx -t ${subjdir}.bedpostX/commands.txt`
--
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