diff --git a/bedpostx_postproc.sh b/bedpostx_postproc.sh index 110d33a1337061d2547f63afbb6f87a48ccf7cb1..0a436431ecf8d9c4dfbe9790f28b0b3e8b1894c5 100755 --- a/bedpostx_postproc.sh +++ b/bedpostx_postproc.sh @@ -27,13 +27,24 @@ done if [ `${FSLDIR}/bin/imtest ${subjdir}.bedpostX/diff_slices/data_slice_0000/mean_dsamples` -eq 1 ];then ${FSLDIR}/bin/fslmerge -z ${subjdir}.bedpostX/mean_dsamples `${FSLDIR}/bin/imglob ${subjdir}.bedpostX/diff_slices/data_slice_*/mean_dsamples*` fi + if [ `${FSLDIR}/bin/imtest ${subjdir}.bedpostX/diff_slices/data_slice_0000/mean_d_stdsamples` -eq 1 ];then ${FSLDIR}/bin/fslmerge -z ${subjdir}.bedpostX/mean_d_stdsamples `${FSLDIR}/bin/imglob ${subjdir}.bedpostX/diff_slices/data_slice_*/mean_d_stdsamples*` fi + if [ `${FSLDIR}/bin/imtest ${subjdir}.bedpostX/diff_slices/data_slice_0000/mean_f0samples` -eq 1 ];then ${FSLDIR}/bin/fslmerge -z ${subjdir}.bedpostX/mean_f0samples `${FSLDIR}/bin/imglob ${subjdir}.bedpostX/diff_slices/data_slice_*/mean_f0samples*` fi +if [ `${FSLDIR}/bin/imtest ${subjdir}.bedpostX/diff_slices/data_slice_0000/mean_S0samples` -eq 1 ];then + ${FSLDIR}/bin/fslmerge -z ${subjdir}.bedpostX/mean_S0samples `${FSLDIR}/bin/imglob ${subjdir}.bedpostX/diff_slices/data_slice_*/mean_S0samples*` +fi + +if [ `${FSLDIR}/bin/imtest ${subjdir}.bedpostX/diff_slices/data_slice_0000/mean_tausamples` -eq 1 ];then + ${FSLDIR}/bin/fslmerge -z ${subjdir}.bedpostX/mean_tausamples `${FSLDIR}/bin/imglob ${subjdir}.bedpostX/diff_slices/data_slice_*/mean_tausamples*` +fi + + echo Removing intermediate files if [ `imtest ${subjdir}.bedpostX/merged_th1samples` -eq 1 ];then