From 24b79fde9466991b17803438d95c9e2e1d13e57f Mon Sep 17 00:00:00 2001
From: Stamatios Sotiropoulos <stam@fmrib.ox.ac.uk>
Date: Tue, 11 Oct 2011 10:56:58 +0000
Subject: [PATCH] Now save meanS0 and meantau
---
bedpostx_postproc.sh | 11 +++++++++++
1 file changed, 11 insertions(+)
diff --git a/bedpostx_postproc.sh b/bedpostx_postproc.sh
index 110d33a..0a43643 100755
--- a/bedpostx_postproc.sh
+++ b/bedpostx_postproc.sh
@@ -27,13 +27,24 @@ done
if [ `${FSLDIR}/bin/imtest ${subjdir}.bedpostX/diff_slices/data_slice_0000/mean_dsamples` -eq 1 ];then
${FSLDIR}/bin/fslmerge -z ${subjdir}.bedpostX/mean_dsamples `${FSLDIR}/bin/imglob ${subjdir}.bedpostX/diff_slices/data_slice_*/mean_dsamples*`
fi
+
if [ `${FSLDIR}/bin/imtest ${subjdir}.bedpostX/diff_slices/data_slice_0000/mean_d_stdsamples` -eq 1 ];then
${FSLDIR}/bin/fslmerge -z ${subjdir}.bedpostX/mean_d_stdsamples `${FSLDIR}/bin/imglob ${subjdir}.bedpostX/diff_slices/data_slice_*/mean_d_stdsamples*`
fi
+
if [ `${FSLDIR}/bin/imtest ${subjdir}.bedpostX/diff_slices/data_slice_0000/mean_f0samples` -eq 1 ];then
${FSLDIR}/bin/fslmerge -z ${subjdir}.bedpostX/mean_f0samples `${FSLDIR}/bin/imglob ${subjdir}.bedpostX/diff_slices/data_slice_*/mean_f0samples*`
fi
+if [ `${FSLDIR}/bin/imtest ${subjdir}.bedpostX/diff_slices/data_slice_0000/mean_S0samples` -eq 1 ];then
+ ${FSLDIR}/bin/fslmerge -z ${subjdir}.bedpostX/mean_S0samples `${FSLDIR}/bin/imglob ${subjdir}.bedpostX/diff_slices/data_slice_*/mean_S0samples*`
+fi
+
+if [ `${FSLDIR}/bin/imtest ${subjdir}.bedpostX/diff_slices/data_slice_0000/mean_tausamples` -eq 1 ];then
+ ${FSLDIR}/bin/fslmerge -z ${subjdir}.bedpostX/mean_tausamples `${FSLDIR}/bin/imglob ${subjdir}.bedpostX/diff_slices/data_slice_*/mean_tausamples*`
+fi
+
+
echo Removing intermediate files
if [ `imtest ${subjdir}.bedpostX/merged_th1samples` -eq 1 ];then
--
GitLab