From 32f39aa3db8e11c213e5f4e15f05ebb975ec847e Mon Sep 17 00:00:00 2001
From: Matthew Webster <mwebster@fmrib.ox.ac.uk>
Date: Wed, 9 May 2007 10:49:45 +0000
Subject: [PATCH] bc update
---
fdtx.tcl | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/fdtx.tcl b/fdtx.tcl
index bb7e3aa..48a6fe3 100644
--- a/fdtx.tcl
+++ b/fdtx.tcl
@@ -733,7 +733,7 @@ proc fdt:apply { w dialog } {
}
seedmask {
if { $probtrack(bcyn) } {
- fdt_monitor_short $w "${FSLDIR}/bin/flirt -in $probtrack(bedpost_dir)/nodif_brain_mask -ref $probtrack(bedpost_dir)/nodif_brain_mask -applyisoxfm 5 -out $probtrack(output)/lowresmask"
+ fdt_monitor_short $w "${FSLDIR}/bin/flirt -in $probtrack(bedpost_dir)/nodif_brain_mask -ref $probtrack(bedpost_dir)/nodif_brain_mask -applyisoxfm $probtrack(scale) -out $probtrack(output)/lowresmask"
fdt_monitor_short $w "${FSLDIR}/bin/avwmaths $probtrack(output)/lowresmask -thr 0.5 -bin $probtrack(output)/lowresmask"
set flags "$flags --lrmask=$probtrack(output)/lowresmask --omatrix2"
}
--
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