From 3359dd294fa6522b19d211ff60295135fce36199 Mon Sep 17 00:00:00 2001
From: Matthew Webster <mwebster@fmrib.ox.ac.uk>
Date: Tue, 1 May 2007 11:05:34 +0000
Subject: [PATCH] saad fixes
---
fdtx.tcl | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/fdtx.tcl b/fdtx.tcl
index c63c94d..41e67d8 100644
--- a/fdtx.tcl
+++ b/fdtx.tcl
@@ -731,9 +731,9 @@ proc fdt:apply { w dialog } {
}
seedmask {
if { $probtrack(bcyn) } {
- fdt_monitor_short $w "${FSLDIR}/bin/flirt -in $probtrack(bedpost_dir)/seed_brain_mask -ref $probtrack(bedpost_dir)/seed_brain_mask -applyisoxfm 5 -out $probtrack(bedpost_dir)/lowresmask"
- fdt_monitor_short $w "${FSLDIR}/bin/avwmaths lowresmask -thr 0.5 -bin lowresmask"
- set flags "$flags --lrmask=lowresmask --omatrix2"
+ fdt_monitor_short $w "${FSLDIR}/bin/flirt -in $probtrack(bedpost_dir)/seed_brain_mask -ref $probtrack(bedpost_dir)/seed_brain_mask -applyisoxfm 5 -out $probtrack(output)/lowresmask"
+ fdt_monitor_short $w "${FSLDIR}/bin/avwmaths $probtrack(output)/lowresmask -thr 0.5 -bin $probtrack(output)/lowresmask"
+ set flags "$flags --lrmask=$probtrack(output)/lowresmask --omatrix2"
}
set flags "--mode=seedmask -x $probtrack(reference) $flags"
}
--
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