diff --git a/bedpostx_postproc.sh b/bedpostx_postproc.sh index b2e4bce7cd151116d95ff7055e67877916ccca4d..180cee92dd37ff390b5e7b82f3035f47bc0db303 100755 --- a/bedpostx_postproc.sh +++ b/bedpostx_postproc.sh @@ -1,6 +1,5 @@ #!/bin/sh -echo ya cock subjdir=$1 numfib=`${FSLDIR}/bin/imglob -oneperimage ${subjdir}.bedpostX/diff_slices/data_slice_0000/f*samples | wc -w | awk '{print $1}'` diff --git a/bedpostx_preproc.sh b/bedpostx_preproc.sh index e31c5a7ce4bfd0ba96148657a2494e351e7a7105..0fab6d43656a4834fe225bee0f42bc481c91ba00 100755 --- a/bedpostx_preproc.sh +++ b/bedpostx_preproc.sh @@ -2,7 +2,7 @@ subjdir=$1 -echo Copying files to bedpost directory - ya cock +echo Copying files to bedpost directory cp ${subjdir}/bvecs ${subjdir}/bvals ${subjdir}.bedpostX ${FSLDIR}/bin/imcp ${subjdir}/nodif_brain_mask ${subjdir}.bedpostX ${FSLDIR}/bin/fslmaths\ diff --git a/bedpostx_single_slice.sh b/bedpostx_single_slice.sh index 11f7a1d6a73e0f68b138d002885201844b58ca52..cf83870c7d2c01cf81d6c450b92b0598b4b1f53d 100755 --- a/bedpostx_single_slice.sh +++ b/bedpostx_single_slice.sh @@ -1,7 +1,5 @@ #!/bin/sh -echo ya cock - subjdir=$1 nfibres=$2 fudge=$3