From 4a86787e58d1b8f319bc2a0ff454dde990533d14 Mon Sep 17 00:00:00 2001 From: Stephen Smith <steve@fmrib.ox.ac.uk> Date: Sun, 29 Jul 2007 12:36:15 +0000 Subject: [PATCH] *** empty log message *** --- doc/fdt_bedpostx.html | 2 +- doc/fdt_reg.html | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/doc/fdt_bedpostx.html b/doc/fdt_bedpostx.html index 4607007..40ca1c5 100644 --- a/doc/fdt_bedpostx.html +++ b/doc/fdt_bedpostx.html @@ -22,7 +22,7 @@ That directory must contain the following files: include diffusion-weighted volumes and volume(s) with no diffusion weighting.</li> <li><b>nodif</b>: 3D volume with no diffusion weighting</li> <li><b>nodif_brain_mask</b>: 3D binary brain mask volume derived -from running <a href="http:www.fmrib.ox.ac.uk/fsl/bet/index.html" target="_top">bet</a> on nodif</li> +from running <a href="../bet2/index.html" target="_top">bet</a> on nodif</li> <li><b>bvecs</b>: A text file containing a list of gradient directions applied during diffusion weighted volumes. The order of entries in this file must match the order of volumes in <b>data</b>. diff --git a/doc/fdt_reg.html b/doc/fdt_reg.html index 7f090e4..1093cac 100644 --- a/doc/fdt_reg.html +++ b/doc/fdt_reg.html @@ -12,7 +12,7 @@ directory, e.g., the space of a high resolution T1-weighted image of the same subject)</li> <li>Standard space (by default, the MNI152 brain stored within $FSLDIR/etc/standard)</li></ul> -<p>Note that struct must have had <a href="../bet/index.html" target="_top">bet</a> applied. The nodif_brain image should be +<p>Note that struct must have had <a href="../bet2/index.html" target="_top">bet</a> applied. The nodif_brain image should be the brain extracted version of the nodif image that is automatically stored in the Bedpost directory. The user will have to manually apply bet to this image after running bedpost and before -- GitLab