From 4baa3559b33f464d790b49a14f126b75be3c0d81 Mon Sep 17 00:00:00 2001
From: Saad Jbabdi <saad@fmrib.ox.ac.uk>
Date: Thu, 15 Mar 2012 10:37:14 +0000
Subject: [PATCH] added masdyads to postproc
---
bedpostx_postproc.sh | 4 ++++
1 file changed, 4 insertions(+)
diff --git a/bedpostx_postproc.sh b/bedpostx_postproc.sh
index 0a43643..8afaac7 100755
--- a/bedpostx_postproc.sh
+++ b/bedpostx_postproc.sh
@@ -19,6 +19,10 @@ do
${FSLDIR}/bin/fslmaths ${subjdir}.bedpostX/merged_f${fib}samples -Tmean ${subjdir}.bedpostX/mean_f${fib}samples
${FSLDIR}/bin/make_dyadic_vectors ${subjdir}.bedpostX/merged_th${fib}samples ${subjdir}.bedpostX/merged_ph${fib}samples ${subjdir}.bedpostX/nodif_brain_mask ${subjdir}.bedpostX/dyads${fib}
+ if [ $fib -ge 2 ];then
+ ${FSLDIR}/bin/maskdyads ${subjdir}.bedpostX/dyads${fib} ${subjdir}.bedpostX/mean_f${fib}samples
+ fi
+
fib=$(($fib + 1))
done
--
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