From 5d851aa9f4a6ea2802fe6514345eb5c1ee6fafcc Mon Sep 17 00:00:00 2001
From: Matthew Webster <mwebster@fmrib.ox.ac.uk>
Date: Thu, 26 Jul 2007 16:28:41 +0000
Subject: [PATCH] changes for darwin compat
---
bedpostx_postproc.sh | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/bedpostx_postproc.sh b/bedpostx_postproc.sh
index 43558a0..a8659b2 100755
--- a/bedpostx_postproc.sh
+++ b/bedpostx_postproc.sh
@@ -9,7 +9,7 @@
subjdir=$1
-numfib=`${FSLDIR}/bin/imglob -oneperimage ${subjdir}.bedpostX/diff_slices/data_slice_0000/f*samples |wc -w`
+numfib=`${FSLDIR}/bin/imglob -oneperimage ${subjdir}.bedpostX/diff_slices/data_slice_0000/f*samples | wc -w | awk '{print $1}'`
for ((fib=1; fib<=$numfib; fib++));do
${FSLDIR}/bin/avwmerge -z ${subjdir}.bedpostX/merged_th${fib}samples `${FSLDIR}/bin/imglob -oneperimage ${subjdir}.bedpostX/diff_slices/data_slice_*/th${fib}samples`
--
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