diff --git a/eddy_correct b/eddy_correct index 8dd7232ca257663f6ac6fea598737c64db953424..c8f9c6096735a70b25a4d0c03fcdfef4ea2bd709 100644 --- a/eddy_correct +++ b/eddy_correct @@ -13,6 +13,8 @@ Usage() { [ "$3" = "" ] && Usage +echo cock + input=`${FSLDIR}/bin/remove_ext ${1}` output=`${FSLDIR}/bin/remove_ext ${2}` ref=${3} @@ -25,7 +27,7 @@ fi fslroi $input $output $ref 1 fslsplit $input -full_list=`${FSLDIR}/bin/imglob -oneperimage vol*` +full_list=`${FSLDIR}/bin/imglob -oneperimage vol????.*` for i in $full_list ; do echo processing $i @@ -35,5 +37,5 @@ done fslmerge -t $output $full_list -/bin/rm vol* +/bin/rm vol????.*