From 69394ce871cfdb90bf7e135e106f952539392f61 Mon Sep 17 00:00:00 2001
From: Saad Jbabdi <saad@fmrib.ox.ac.uk>
Date: Mon, 30 Apr 2007 09:10:34 +0000
Subject: [PATCH] small changes
---
probtrackxOptions.h | 10 +++++-----
streamlines.cc | 1 +
2 files changed, 6 insertions(+), 5 deletions(-)
diff --git a/probtrackxOptions.h b/probtrackxOptions.h
index 4e2ed69..f3e6f6e 100644
--- a/probtrackxOptions.h
+++ b/probtrackxOptions.h
@@ -94,22 +94,22 @@ class probtrackxOptions {
help(string("-h,--help"), false,
string("display this message"),
false, no_argument),
- basename(string("-s,--samples"), string("DTI"),
+ basename(string("-s,--samples"), string("merged"),
string("basename for samples files"),
true, requires_argument),
maskfile(string("-m,--mask"), string("mask"),
string("Bet binary mask file in diffusion space"),
true, requires_argument),
seedfile(string("-x,--seed"), string("Seed"),
- string("Seed volume or voxel depending on mode"),
+ string("Seed volume, or voxel, or ascii file with multiple volumes"),
true, requires_argument),
mode(string("--mode"), string(""),
string("use --mode=simple for single seed voxel"),
false, requires_argument),
targetfile(string("--targetmasks"), string("cmasks"),
- string("File containing a list of target masks - required for seeds_to_targets mode"),
+ string("File containing a list of target masks - required for seeds_to_targets classification"),
false, requires_argument),
- simpleout(string("--opd"), false,
+ simpleout(string("--opd"), true,
string("output path distribution"),
false, no_argument),
pathdist(string("--pd"), false,
@@ -151,7 +151,7 @@ class probtrackxOptions {
string("Waypoint mask or ascii list of waypoint masks - only keep paths going through ALL the masks"),
false, requires_argument),
network(string("--network"), false,
- string("Only keep paths going through at least one waypoint mask, or another seed in multiple seeds mode"),
+ string("Activate network mode - only keep paths going through at least one seed mask (required if multiple seed masks)"),
false, no_argument),
meshfile(string("--mesh"), string(""),
string(""),
diff --git a/streamlines.cc b/streamlines.cc
index 910bcac..e7fd8de 100644
--- a/streamlines.cc
+++ b/streamlines.cc
@@ -129,6 +129,7 @@ namespace TRACT{
int x_s =(int)round((float)xyz_seeds(1));
int y_s =(int)round((float)xyz_seeds(2));
int z_s =(int)round((float)xyz_seeds(3));
+
//update every passed_flag
for( unsigned int wm=0;wm<m_waymasks.size();wm++ ){
--
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