diff --git a/Makefile b/Makefile index 046f617e83f2053d354eb07c5676038627539ca6..8608409292042a531aa2bc7c02e184ed987b9f83 100644 --- a/Makefile +++ b/Makefile @@ -26,12 +26,13 @@ MDV=make_dyadic_vectors FMO=fdt_matrix_ops INDEXER=indexer TEST=testfile +ORDVEC=reorder_dyadic_vectors DTIFITOBJS=dtifit.o dtifitOptions.o CCOPSOBJS=ccops.o ccopsOptions.o PTOBJS=probtrack.o probtrackOptions.o pt_alltracts.o pt_matrix.o pt_seeds_to_targets.o pt_simple.o pt_twomasks.o pt_matrix_mesh.o -PTXOBJS=probtrackx.o probtrackxOptions.o streamlines.o ptx_simple.o ptx_seedmask.o ptx_twomasks.o +PTXOBJS=probtrackx.o probtrackxOptions.o streamlines.o ptx_simple.o ptx_seedmask.o ptx_twomasks.o ptx_nmasks.o FTBOBJS=find_the_biggest.o PJOBJS=proj_thresh.o MEDOBJS=medianfilter.o @@ -44,11 +45,12 @@ MDVOBJS=make_dyadic_vectors.o FMOOBJS=fdt_matrix_ops.o INDEXEROBJS=indexer.o TESTOBJS=testfile.o +ORDVECOBJS=reorder_dyadic_vectors.o heap.o SGEBEDPOST =sge_bedpost sge_bedpost_postproc.sh sge_bedpost_preproc.sh sge_bedpost_single_slice.sh SGEBEDPOSTX=sge_bedpostX sge_bedpostX_postproc.sh sge_bedpostX_preproc.sh sge_bedpostX_single_slice.sh -SCRIPTS = eddy_correct bedpost bedpost_proc bedpost_cleanup bedpost_kill_all bedpost_kill_pid zeropad bedpost_datacheck +SCRIPTS = eddy_correct bedpost bedpost_proc bedpost_cleanup bedpost_kill_all bedpost_kill_pid zeropad bedpost_datacheck bedpostX bedpostX_proc FSCRIPTS=correct_and_average ocmr_preproc bedpostX bedpostX_proc bedpostX_cleanup bedpostX_kill_all \ ${SGEBEDPOST} ${SGEBEDPOSTX} @@ -109,6 +111,10 @@ ${TEST}: ${TESTOBJS} ${CXX} ${CXXFLAGS} ${LDFLAGS} -o $@ ${TESTOBJS} ${DLIBS} +${ORDVEC}: ${ORDVECOBJS} + ${CXX} ${CXXFLAGS} ${LDFLAGS} -o $@ ${ORDVECOBJS} ${DLIBS} + +