diff --git a/Makefile b/Makefile index 908f7ef46587f994802ab2eabdf90e0368c73805..3681f3f3a8169bab2a6c9229febe4dfbeb80deb8 100644 --- a/Makefile +++ b/Makefile @@ -29,6 +29,7 @@ PVMFIT=pvmfit DTIGEN=dtigen RARNG=rearrange XPRED=xfibres_pred +RUBIX=rubix DTIFITOBJS=dtifit.o dtifitOptions.o diffmodels.o Bingham_Watson_approx.o @@ -49,10 +50,11 @@ TESTOBJS=testfile.o VECREGOBJS=vecreg.o KURTOSISOBJS=kurtosis.o dtifitOptions.o SWAPDYADSOBJS=swap_dyadic_vectors.o -PVMFITOBJS=pvmfit.o pvmfitOptions.o diffmodels.o Bingham_Watson_approx.o +PVMFITOBJS=pvmfit.o pvmfitOptions.o diffmodels.o Bingham_Watson_approx.o DTIGENOBJS=dtigen.o RARNGOBJS=rearrange.o XPREDOBJS=xfibres_pred.o +RUBIXOBJS=rubix.o diffmodels.o rubixvox.o rubixoptions.o Bingham_Watson_approx.o SGEBEDPOST = bedpost SGEBEDPOSTX = bedpostx bedpostx_postproc.sh bedpostx_preproc.sh bedpostx_single_slice.sh bedpostx_datacheck @@ -60,7 +62,7 @@ SGEBEDPOSTX = bedpostx bedpostx_postproc.sh bedpostx_preproc.sh bedpostx_single_ SCRIPTS = eddy_correct zeropad maskdyads probtrack rotate_bvecs ${SGEBEDPOST} ${SGEBEDPOSTX} FSCRIPTS = correct_and_average ocmr_preproc -XFILES = dtifit ccops find_the_biggest medianfilter make_dyadic_vectors proj_thresh vecreg xfibres probtrackx pvmfit +XFILES = dtifit ccops find_the_biggest medianfilter make_dyadic_vectors proj_thresh vecreg xfibres probtrackx pvmfit rubix FXFILES = reord_OM sausages replacevols fdt_matrix_ops indexer rearrange xfibres_pred @@ -138,3 +140,6 @@ ${RARNG}: ${RARNGOBJS} ${XPRED}: ${XPREDOBJS} ${CXX} ${CXXFLAGS} ${LDFLAGS} -o $@ ${XPREDOBJS} ${DLIBS} + +${RUBIX}: ${RUBIXOBJS} + ${CXX} ${CXXFLAGS} ${LDFLAGS} -o $@ ${RUBIXOBJS} ${DLIBS} \ No newline at end of file