diff --git a/old_bedpost b/old_bedpost index 2bb281b120d616889aad0079a2e5a4736d7cb90d..0fb46a6931d4f2ff59052fffeb33fd560f3cda77 100755 --- a/old_bedpost +++ b/old_bedpost @@ -152,7 +152,7 @@ ${FSLDIR}/bin/avwmaths ${subjdir}/nodif -mas ${subjdir}/nodif_brain_mask ${subjd mkdir -p ${subjdir}.bedpost/logs mkdir -p ${subjdir}.bedpost/logs/pid_${$} -nslices=`avwval ${subjdir}/data dim3` +nslices=`${FSLDIR}/bin/avwval ${subjdir}/data dim3` ${FSLDIR}/bin/avwslice ${subjdir}/data ${FSLDIR}/bin/avwslice ${subjdir}/nodif_brain_mask