From 85d58b7f43d6d330ff20f17a1c8456d7ac49584e Mon Sep 17 00:00:00 2001
From: Stephen Smith <steve@fmrib.ox.ac.uk>
Date: Fri, 7 Jan 2005 14:49:50 +0000
Subject: [PATCH] fixed bug - added full path to avwval call
---
old_bedpost | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/old_bedpost b/old_bedpost
index 2bb281b..0fb46a6 100755
--- a/old_bedpost
+++ b/old_bedpost
@@ -152,7 +152,7 @@ ${FSLDIR}/bin/avwmaths ${subjdir}/nodif -mas ${subjdir}/nodif_brain_mask ${subjd
mkdir -p ${subjdir}.bedpost/logs
mkdir -p ${subjdir}.bedpost/logs/pid_${$}
-nslices=`avwval ${subjdir}/data dim3`
+nslices=`${FSLDIR}/bin/avwval ${subjdir}/data dim3`
${FSLDIR}/bin/avwslice ${subjdir}/data
${FSLDIR}/bin/avwslice ${subjdir}/nodif_brain_mask
--
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