diff --git a/fdt.tcl b/fdt.tcl
index 4cd082cd5b1955791285128260233d8cf54be3d6..ebf786ebeaa4259feead0f7b65c61bc13140474e 100644
--- a/fdt.tcl
+++ b/fdt.tcl
@@ -881,7 +881,7 @@ proc fdt:apply { w dialog } {
     }
 
     if { $canwrite } { 
-	if { $FSLPARALLEL } { MxPause " Job submitted to queue" } else  { MxPause "  Done!  " }
+	if { $FSLPARALLEL && { $probtrack(tool) == "bedpost" || $probtrack(tool)=="probtrack" } } { MxPause " Job submitted to queue" } else  { MxPause "  Done!  " }
 	update idletasks
     }