diff --git a/rubix_preproc.sh b/rubix_preproc.sh index 222983c1309f25606bcff458d93e3aba1467f55d..0cec5d50d4eba921f757fd263e4b17b03eef4462 100644 --- a/rubix_preproc.sh +++ b/rubix_preproc.sh @@ -33,9 +33,9 @@ else cp ${subjdir}/bvecsLR $out_dir/bvecsLR cp ${subjdir}/bvecsHR $out_dir/bvecsHR cp ${subjdir}/bvalsHR $out_dir/bvalsHR - ${FSLDIR}/bin/fslslice $subjdir/dataLR $out_dir/$dataLR + ${FSLDIR}/bin/fslslice $subjdir/dataLR $out_dir/dataLR ${FSLDIR}/bin/fslslice $subjdir/$maskLR $out_dir/$maskLR - ${FSLDIR}/bin/fslslice $subjdir/dataHR $out_dir/$dataHR + ${FSLDIR}/bin/fslslice $subjdir/dataHR $out_dir/dataHR if [ ${gflag} -eq 1 ]; then ${FSLDIR}/bin/fslslice $subjdir/grad_devLR $out_dir/grad_devLR ${FSLDIR}/bin/fslslice $subjdir/grad_devHR $out_dir/grad_devHR