diff --git a/bedpostx_postproc.sh b/bedpostx_postproc.sh index 91a1f14f7cba0f885a64e1a7e8c8c4bdf8e4bc2f..c4afa024614e1ea95f31d289d5f440266fd33aae 100755 --- a/bedpostx_postproc.sh +++ b/bedpostx_postproc.sh @@ -29,6 +29,16 @@ do done +if [ `${FSLDIR}/bin/imtest ${subjdir}.bedpostX/mean_f1samples` -eq 1 ];then + ${FSLDIR}/bin/fslmaths ${subjdir}.bedpostX/mean_f1samples -mul 0 ${subjdir}.bedpostX/mean_fsamples + fib=1 + while [ $fib -le $numfib ] + do + fslmaths ${subjdir}.bedpostX/mean_fsamples -add ${subjdir}.bedpostX/mean_f${fib}samples ${subjdir}.bedpostX/mean_fsamples + fib=$(($fib + 1)) + done +fi + if [ `${FSLDIR}/bin/imtest ${subjdir}.bedpostX/diff_slices/data_slice_0000/mean_dsamples` -eq 1 ];then ${FSLDIR}/bin/fslmerge -z ${subjdir}.bedpostX/mean_dsamples `${FSLDIR}/bin/imglob ${subjdir}.bedpostX/diff_slices/data_slice_*/mean_dsamples*`