From 9c8e8155b844fc872df001710c3a7a91df1fa7c6 Mon Sep 17 00:00:00 2001
From: Stamatios Sotiropoulos <stam@fmrib.ox.ac.uk>
Date: Tue, 4 Sep 2012 18:27:34 +0000
Subject: [PATCH] Added sum of fs in the output
---
bedpostx_postproc.sh | 10 ++++++++++
1 file changed, 10 insertions(+)
diff --git a/bedpostx_postproc.sh b/bedpostx_postproc.sh
index 91a1f14..c4afa02 100755
--- a/bedpostx_postproc.sh
+++ b/bedpostx_postproc.sh
@@ -29,6 +29,16 @@ do
done
+if [ `${FSLDIR}/bin/imtest ${subjdir}.bedpostX/mean_f1samples` -eq 1 ];then
+ ${FSLDIR}/bin/fslmaths ${subjdir}.bedpostX/mean_f1samples -mul 0 ${subjdir}.bedpostX/mean_fsamples
+ fib=1
+ while [ $fib -le $numfib ]
+ do
+ fslmaths ${subjdir}.bedpostX/mean_fsamples -add ${subjdir}.bedpostX/mean_f${fib}samples ${subjdir}.bedpostX/mean_fsamples
+ fib=$(($fib + 1))
+ done
+fi
+
if [ `${FSLDIR}/bin/imtest ${subjdir}.bedpostX/diff_slices/data_slice_0000/mean_dsamples` -eq 1 ];then
${FSLDIR}/bin/fslmerge -z ${subjdir}.bedpostX/mean_dsamples `${FSLDIR}/bin/imglob ${subjdir}.bedpostX/diff_slices/data_slice_*/mean_dsamples*`
--
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