From a0cb353257a0cd0264abcf56c58827231e85cf42 Mon Sep 17 00:00:00 2001
From: Stamatios Sotiropoulos <stam@fmrib.ox.ac.uk>
Date: Sat, 14 Jul 2012 15:21:45 +0000
Subject: [PATCH] Add grad-nonlinearity option
---
bedpostx_preproc.sh | 5 +++++
1 file changed, 5 insertions(+)
diff --git a/bedpostx_preproc.sh b/bedpostx_preproc.sh
index bb95ab4..652c250 100755
--- a/bedpostx_preproc.sh
+++ b/bedpostx_preproc.sh
@@ -1,6 +1,7 @@
#!/bin/sh
subjdir=$1
+gflag=$2
echo Copying files to bedpost directory
cp ${subjdir}/bvecs ${subjdir}/bvals ${subjdir}.bedpostX
@@ -12,4 +13,8 @@ fi
${FSLDIR}/bin/fslslice ${subjdir}/data
${FSLDIR}/bin/fslslice ${subjdir}/nodif_brain_mask
+if [ ${gflag} -eq 1 ]; then
+ ${FSLDIR}/bin/fslslice ${subjdir}/grad_dev
+fi
+
echo Done
--
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