diff --git a/rubix_preproc.sh b/rubix_preproc.sh index 26f5358c63983cae858a828bb5ee1f113fb48e72..f797f7a878c9c53e7b8e0c6f34723ecd05db711c 100644 --- a/rubix_preproc.sh +++ b/rubix_preproc.sh @@ -12,7 +12,7 @@ if [ ${filterflag} -eq 1 ]; then cp ${subjdir}/bvecs $out_dir/bvecsLR cp ${subjdir}/bvecs $out_dir/bvecsHR cp ${subjdir}/bvals $out_dir/bvalsHR - ${FSLDIR}/bin/fslslice $subjdir/data $out_dir/$dataHR + ${FSLDIR}/bin/fslslice $subjdir/data $out_dir/dataHR HighRes=`fslval ${subjdir}/data pixdim1` LowRes=`echo "${HighRes} * 2" | bc -l` echo "Create Downsampled version of data at ${LowRes} mm isotropic"