From c8c7e0066096a78bffd1bd6a55c8c68d340567e6 Mon Sep 17 00:00:00 2001
From: Moises Fernandez <moisesf@fmrib.ox.ac.uk>
Date: Mon, 24 Jun 2013 10:54:30 +0000
Subject: [PATCH] Split dataLR and maskLR after generate them in FILTERING MODE
---
rubix_preproc.sh | 2 ++
1 file changed, 2 insertions(+)
diff --git a/rubix_preproc.sh b/rubix_preproc.sh
index 6a5cfd1..26f5358 100644
--- a/rubix_preproc.sh
+++ b/rubix_preproc.sh
@@ -18,6 +18,8 @@ if [ ${filterflag} -eq 1 ]; then
echo "Create Downsampled version of data at ${LowRes} mm isotropic"
${FSLDIR}/bin/flirt -in ${subjdir}/nodif_brain_mask -ref ${subjdir}/nodif_brain_mask -applyisoxfm ${LowRes} -interp nearestneighbour -out ${out_dir}/nodif_brain_maskLR
${FSLDIR}/bin/flirt -in ${subjdir}/data -ref ${subjdir}/data -applyisoxfm ${LowRes} -interp sinc -out ${out_dir}/dataLR
+ ${FSLDIR}/bin/fslslice ${out_dir}/dataLR ${out_dir}/dataLR
+ ${FSLDIR}/bin/fslslice ${out_dir}/$maskLR ${out_dir}/$maskLR
if [ ${gflag} -eq 1 ]; then
echo "Create Downsampled version of grad_dev at ${LowRes} mm isotropic"
${FSLDIR}/bin/flirt -in ${subjdir}/grad_dev -ref ${subjdir}/grad_dev -applyisoxfm ${LowRes} -interp nearestneighbour -out ${out_dir}/grad_devLR
--
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