From d403f90142d7fda860cb62b597b92705d1036dfd Mon Sep 17 00:00:00 2001
From: Saad Jbabdi <saad@fmrib.ox.ac.uk>
Date: Wed, 8 Apr 2009 08:54:29 +0000
Subject: [PATCH] sorted mesh tracking
---
probtrackxOptions.h | 17 +++++++++++------
ptx_meshmask.cc | 2 ++
2 files changed, 13 insertions(+), 6 deletions(-)
diff --git a/probtrackxOptions.h b/probtrackxOptions.h
index 80efc0a..f38519e 100644
--- a/probtrackxOptions.h
+++ b/probtrackxOptions.h
@@ -67,6 +67,7 @@ class probtrackxOptions {
Option<bool> modeuler;
Option<int> rseed;
Option<bool> seedcountastext;
+ FmribOption<bool> splitmatrix2;
void parse_command_line(int argc, char** argv,Log& logger);
void modecheck();
@@ -203,12 +204,15 @@ class probtrackxOptions {
modeuler(string("--modeuler"), false,
string("Use modified euler streamlining"),
false, no_argument),
- rseed(string("--rseed"), 12345,
- string("Random seed"),
- false, requires_argument),
- seedcountastext(string("--seedcountastext"), false,
- string("Output seed-to-target counts as a text file (useful when seeding from a mesh)"),
- false, no_argument),
+ rseed(string("--rseed"), 12345,
+ string("Random seed"),
+ false, requires_argument),
+ seedcountastext(string("--seedcountastext"), false,
+ string("Output seed-to-target counts as a text file (useful when seeding from a mesh)"),
+ false, no_argument),
+ splitmatrix2(string("--splitmatrix2"), false,
+ string("split matrix 2 (in case it is too big)"),
+ false, no_argument),
options("probtrackx","probtrackx -s <basename> -m <maskname> -x <seedfile> -o <output> --targetmasks=<textfile>\n probtrackx --help\n")
{
@@ -253,6 +257,7 @@ class probtrackxOptions {
options.add(modeuler);
options.add(rseed);
options.add(seedcountastext);
+ options.add(splitmatrix2);
}
catch(X_OptionError& e) {
options.usage();
diff --git a/ptx_meshmask.cc b/ptx_meshmask.cc
index c7ed837..8bd9850 100644
--- a/ptx_meshmask.cc
+++ b/ptx_meshmask.cc
@@ -19,9 +19,11 @@ void meshmask()
probtrackxOptions& opts =probtrackxOptions::getInstance();
// load seed mesh
+ cout<<"loading mesh files"<<endl;
Mesh mseeds;
mseeds.load(opts.meshfile.value());
mseeds.load_fs_label(opts.seedfile.value());
+ cout<<"mesh files loaded"<<endl;
// internally create seed mask in voxel space
volume<float> seeds;
--
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