From d6d3b82350a48ae971239ba1db745b418dc4e87d Mon Sep 17 00:00:00 2001
From: Stamatios Sotiropoulos <stam@fmrib.ox.ac.uk>
Date: Mon, 10 Oct 2011 11:15:09 +0000
Subject: [PATCH] Include noise floor as an option
---
pvmfitOptions.h | 9 +++++++--
1 file changed, 7 insertions(+), 2 deletions(-)
diff --git a/pvmfitOptions.h b/pvmfitOptions.h
index 24deea9..8b023c3 100644
--- a/pvmfitOptions.h
+++ b/pvmfitOptions.h
@@ -36,6 +36,7 @@ class pvmfitOptions {
Option<string> bvalsfile;
Option<int> nfibres;
Option<int> modelnum;
+ Option<bool> include_f0;
Option<bool> cnonlinear;
bool parse_command_line(int argc, char** argv);
@@ -84,10 +85,13 @@ class pvmfitOptions {
string("number of fibres to fit - default=1"),
false, requires_argument),
modelnum(string("--model"), 1,
- string("1:monoexponential;2:non mono-exponential"),
+ string("\t1:monoexponential;2:non mono-exponential"),
false, requires_argument),
+ include_f0(string("--f0"),false,
+ string("\tInclude noise floor in the model (default=false)"),
+ false,no_argument),
cnonlinear(string("--cnonlinear"),false,
- string("Apply constrained nonlinear optimization on the diffusivity, volume fractions and their sum"),
+ string("Apply constrained nonlinear optimization on diffusivity, volume fractions (model1)"),
false,no_argument),
options("pvmfit", "pvmfit -k <datafile> -m <maskfile> -r <bvecsfile> -b <bvalsfile> [-n 2]\n")
{
@@ -103,6 +107,7 @@ class pvmfitOptions {
options.add(bvalsfile);
options.add(nfibres);
options.add(modelnum);
+ options.add(include_f0);
options.add(cnonlinear);
}
catch(X_OptionError& e) {
--
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