Commit 82c70c1a authored by Matthew Webster's avatar Matthew Webster
Browse files

MH changes for reporting, from 11/11/19 email

parent 66d07091
......@@ -16,9 +16,9 @@
function fix_3_clean(fixlist,aggressive,domot,hp,varargin)
if (isdeployed)
aggressive = str2num(aggressive)
domot = str2num(domot)
hp = str2num(hp)
aggressive = str2num(aggressive);
domot = str2num(domot);
hp = str2num(hp);
end
%%% setup the following variables for your site
......@@ -37,13 +37,20 @@ else
DOvol=0;
end
end
fprintf('DOvol = %d\n',DOvol) %Report final DOvol value
%%% report parameters
fprintf('aggressive = %d\n',aggressive)
fprintf('domot = %d\n',domot)
fprintf('hp = %f\n',hp)
fprintf('DOvol = %d\n',DOvol)
%%%% read set of bad components
DDremove=load(fixlist);
%%%% find TR of data
[grot,TR]=call_fsl('fslval filtered_func_data pixdim4'); TR=str2num(TR)
[grot,TR]=call_fsl('fslval filtered_func_data pixdim4');
TR=str2num(TR);
fprintf('TR = %f\n',TR)
%%%% read and highpass CIFTI version of the data if it exists
DObrainord=0;
......
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