Commit a034bf5e authored by William Clarke's avatar William Clarke
Browse files

CTR comments on report.

parent f81bce0a
......@@ -371,7 +371,7 @@ def create_report(mrs,res,filename,fidfile,basisfile,h2ofile,date,location_fig =
else:
algo = ""
methods=f"<p>Fitting of the SVS data was performed using a Linear Combination model as described in [1] and as implemented in FSL-MRS version {__version__}, part of FSL (FMRIB's Software Library, www.fmrib.ox.ac.uk/fsl). Briefly, basis spectra are fitted to the complex FID in the frequency domain. The basis spectra are shifted and broadened with parameters fitted to the data and grouped into {max(res.metab_groups)+1} metabolite groups. A complex polynomial baseline is also concurrrently fitted (order={res.baseline_order}). {algo} <p><h3>References</h3><p>[1] Clarke WT, Jbabdi S. FSL-MRS: An end-to-end spectroscopy analysis package (2020)."
methods=f"<p>Fitting of the SVS data was performed using a Linear Combination model as described in [1] and as implemented in FSL-MRS version {__version__}, part of FSL (FMRIB's Software Library, www.fmrib.ox.ac.uk/fsl). Briefly, basis spectra are fitted to the complex-valued spectrum in the frequency domain. The basis spectra are shifted and broadened with parameters fitted to the data and grouped into {max(res.metab_groups)+1} metabolite groups. A complex polynomial baseline is also concurrrently fitted (order={res.baseline_order}). {algo} <p><h3>References</h3><p>[1] Clarke WT, Jbabdi S. FSL-MRS: An end-to-end spectroscopy analysis package (2020)."
section=f"""
<h1><a name="methods">Analysis methods</a></h1>
<div>{methods}</div>
......
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