Commits · master · FSL / fsl_mrs

19 Jan, 2023 3 commits
- Merge branch 'rf/nifti-mrs_tools' into 'master' · a2dd6c38
  William Clarke authored Jan 19, 2023
```
RF/nifti-mrs tools and fmrs fixes

See merge request !72
```
  a2dd6c38
- Fix bugs in fmrs stats contrasts. · 0d8470ec
  William Clarke authored Jan 19, 2023
  
  0d8470ec
- Fix fmrs stats error for 1d matrices. · 13e3d748
  William Clarke authored Jan 19, 2023
  
  13e3d748
18 Jan, 2023 1 commit
- Move to nifti-mrs dependency. · 675f4c5f
  William Clarke authored Jan 18, 2023
  
  675f4c5f
23 Nov, 2022 2 commits
- Merge branch 'bf/mrsi_segment_norm' into 'master' · 92d44f4e
  William Clarke authored Nov 23, 2022
```
BF: Mrsi segment normalisation & FWHM of inverted peaks

See merge request !71
```
  92d44f4e
- Fix inverted peak QC issues. · 7700bf97
  William Clarke authored Nov 23, 2022
  
  7700bf97
21 Nov, 2022 1 commit
- Added normalisation to the segmentation scripst, all voxels should now sum to 1. · 2912c594
  William Clarke authored Nov 21, 2022
  
  2912c594
07 Nov, 2022 4 commits
- Merge branch 'enh/dynamic_init_options' into 'master' · b12cc7c4
  William Clarke authored Nov 07, 2022
```
ENH: Dynamic init options

See merge request !70
```
  b12cc7c4
- [skip-tests] Lint · c5907937
  William Clarke authored Nov 07, 2022
  
  c5907937
- Added free parameter initilisation options to dynamic. · 96d028bf
  William Clarke authored Nov 07, 2022
  
  96d028bf
- Merge branch 'enh/align_limits_preproc' into 'master' · b5de768a
  William Clarke authored Nov 07, 2022
```
ENH: Align limits preproc

See merge request !69
```
  b5de768a
28 Oct, 2022 4 commits
- Add tests for new warnings. · 8288d38a
  William Clarke authored Oct 28, 2022
  
  8288d38a
- Also add check to fsl_mrsi · 26c71ffe
  William Clarke authored Oct 28, 2022
  
  26c71ffe
- Add warning about default MM absis spectra that aren't listed in metab_groups. · cd7ee3e1
  William Clarke authored Oct 28, 2022
  
  cd7ee3e1
- Add optional alignment limits to the preproc script. Maches functionality of proc align. · a2c9e56b
  William Clarke authored Oct 28, 2022
  
  a2c9e56b
21 Oct, 2022 1 commit
- Merge branch 'enh/basis_alignment' into 'master' · a51b69df
  William Clarke authored Oct 21, 2022
```
ENH:Basis alignment tool

See merge request !68
```
  a51b69df
20 Oct, 2022 2 commits
- Fix fsl_mrs_preproc bug. No tests for shift_all. · a3c83096
  William Clarke authored Oct 20, 2022
  
  a3c83096
- Add new basis_tool option · b476b980
  William Clarke authored Oct 20, 2022
  
  b476b980
19 Oct, 2022 6 commits
- Merge branch 'enh/linearphase_proc' into 'master' · 72a51b48
  William Clarke authored Oct 19, 2022
```
ENH: Linphase option to fixed phase processing. Includes tests.

See merge request !67
```
  72a51b48
- [skip-tests] Add more detailed linear phase output to report. · c8d1308a
  William Clarke authored Oct 19, 2022
  
  c8d1308a
- [skip-tests] Add more detailed linear phase output to report. · 1a5699bf
  William Clarke authored Oct 19, 2022
  
  1a5699bf
- Linphase option to fixed phase processing. Includes tests. · dde81361
  William Clarke authored Oct 19, 2022
  
  dde81361
- Merge branch 'rf/model_refactor' into 'master' · 71457594
  William Clarke authored Oct 19, 2022
```
RF: Refactor model definitions, add free_shift model

See merge request !66
```
  71457594
- RF: Refactor model definitions, add free_shift model · 8d4f3dea
  William Clarke authored Oct 19, 2022
  
  8d4f3dea
17 Oct, 2022 2 commits
- Merge branch 'enh/version_validation' into 'master' · 93dd9338
  William Clarke authored Oct 17, 2022
```
ENH: New version validation

See merge request !65
```
  93dd9338
- ENH: New version validation · ecb3c5d5
  William Clarke authored Oct 17, 2022
  
  ecb3c5d5
06 Oct, 2022 4 commits
- Merge branch 'bf/dynamic_fl_report' into 'master' · 4e0d4e5e
  William Clarke authored Oct 06, 2022
```
BF: Dynamic first level report

See merge request fsl/fsl_mrs!64
```
  4e0d4e5e
- Changelog · 2922a20a
  William Clarke authored Oct 06, 2022
  
  2922a20a
- Update CHANGELOG and small tweak to Win install instructions. · 87e06d1d
  William Clarke authored Oct 06, 2022
  
  87e06d1d
- Modify legend behavior in the dyn report. Add tests fro fsl_dynmrs. · 2c476944
  William Clarke authored Oct 06, 2022
  
  2c476944
05 Oct, 2022 3 commits
- Merge branch 'enh/fmrs_processing' into 'master' · d55c0cdb
  William Clarke authored Oct 05, 2022
```
ENH:fMRS processing

See merge request fsl/fsl_mrs!63
```
  d55c0cdb
- Stage 2, better handling of the frequency shift and add the --fmrs option. · f3890eab
  William Clarke authored Oct 05, 2022
  
  f3890eab
- Stage 1 done, average phasing and tidy up of preproc. · 37ed17d6
  William Clarke authored Oct 05, 2022
  
  37ed17d6
28 Sep, 2022 2 commits
- Merge branch 'enh/post_fsl_course_suggestions' into 'master' · 0eb16ec7
  William Clarke authored Sep 28, 2022
```
Enh: Post FSL course suggestions

See merge request fsl/fsl_mrs!62
```
  0eb16ec7
- Add tests for utility methods. · 270385b0
  William Clarke authored Sep 28, 2022
  
  270385b0
27 Sep, 2022 2 commits
- Update changelog · 79df2aa6
  William Clarke authored Sep 27, 2022
  
  79df2aa6
- Add utility methods fit and plot to mrs and results objects respectively. Clean up plotting module. · 00f6c86e
  William Clarke authored Sep 27, 2022
  
  00f6c86e
26 Sep, 2022 3 commits
- Better file labelling of mrs_tools split output. · eb2ebdc6
  William Clarke authored Sep 26, 2022
  
  eb2ebdc6
- Merge branch 'bf/summarise_relative_paths' into 'master' · 18194556
  William Clarke authored Sep 26, 2022
```
Bf: fsl_mrs_summarise relative path handling

See merge request fsl/fsl_mrs!61
```
  18194556
- lint · 01b0b82c
  William Clarke authored Sep 26, 2022
  
  01b0b82c