Commits · master · FSL / fsl_sub_plugin_sge

30 Sep, 2022 1 commit
- Use warnings not logger.warn · d913a0e0
  Duncan Mortimer authored Sep 30, 2022
  
  d913a0e0
29 Sep, 2022 1 commit
- Ensure fsl_sub 2.7 is installed · 60c940d7
  Duncan Mortimer authored Sep 29, 2022
  
  60c940d7
17 Dec, 2021 2 commits
- Merge branch 'master' of git.fmrib.ox.ac.uk:fsl/fsl_sub_plugin_sge · 1c7c31fe
  Duncan Mortimer authored Dec 17, 2021
  
  1c7c31fe
- Add method to report whether the plugin suggests GPU config · f225c901
  Duncan Mortimer authored Dec 17, 2021
  
  f225c901
03 Dec, 2021 2 commits
- Merge branch 'master' of git.fmrib.ox.ac.uk:fsl/fsl_sub_plugin_sge · b64d7e00
  Duncan Mortimer authored Dec 03, 2021
  
  b64d7e00
- Add configuration option to specify that the · 82710c2a
  Duncan Mortimer authored Dec 03, 2021
```
plugin supports parallel environments.
```
  82710c2a
25 Nov, 2021 2 commits
- Merge branch 'mnt/conda' into 'master' · 88cc5d67
  Paul McCarthy authored Nov 25, 2021
```
Condafy fsl-sub

See merge request !1
```
  88cc5d67
- DOC: package name tweak · 099388ee
  Paul McCarthy authored Nov 25, 2021
  
  099388ee
23 Nov, 2021 3 commits
- DOC: formatting · 067ba49a
  Paul McCarthy authored Nov 23, 2021
  
  067ba49a
- MNT: version · c910406e
  Paul McCarthy authored Nov 23, 2021
  
  c910406e
- DOC: Update docs/instructions for new conda setup · c71f6816
  Paul McCarthy authored Nov 23, 2021
  
  c71f6816
22 Nov, 2021 1 commit
- RF: remove conda recipe from project repo (new recipe located at · e0b08086
  Paul McCarthy authored Aug 16, 2021
```
fsl/conda/fsl-sub_plugin_sge), remove ruamel.yaml from setup dependencies
```
  e0b08086
19 Nov, 2021 4 commits
- Document changes and bump version number · 413cc5ca
  Duncan Mortimer authored Nov 19, 2021
  
  413cc5ca
- Merge branch 'master' of git.fmrib.ox.ac.uk:fsl/fsl_sub_plugin_sge · 56c53682
  Duncan Mortimer authored Nov 19, 2021
  
  56c53682
- Improve operation of usescript call method: · c77bb77d
  Duncan Mortimer authored Nov 19, 2021
```
Make queue and name optional
```
  c77bb77d
- Avoid linter complaints about use of 'l' variable · 73d2d0b7
  Duncan Mortimer authored Nov 19, 2021
  
  73d2d0b7
15 Nov, 2021 4 commits
- Update information about default for preserve_modules · 92d9ee79
  Duncan Mortimer authored Nov 15, 2021
  
  92d9ee79
- Bump version number and note changes · 54fd1ac4
  Duncan Mortimer authored Nov 15, 2021
  
  54fd1ac4
- Add support for passing arbitrary arguments to qsub · 082b2e33
  Duncan Mortimer authored Nov 15, 2021
  
  082b2e33
- preserve_modules and copy_environment should be · cbd2e372
  Duncan Mortimer authored Nov 15, 2021
```
mutually exclusive
```
  cbd2e372
10 Nov, 2021 1 commit
- Implement missing export_vars conf option · 107b8fb8
  Duncan Mortimer authored Nov 10, 2021
  
  107b8fb8
19 Aug, 2021 1 commit
- Add queue name to report of no definition · 482276f7
  Duncan Mortimer authored Aug 19, 2021
  
  482276f7
08 Jul, 2021 1 commit
- Add support for passing environment variables that · 269cc40f
  Duncan Mortimer authored Jul 08, 2021
```
have '=' in their name
```
  269cc40f
27 May, 2021 4 commits
- Change fsl_sub dependent version · b9804b3e
  Duncan Mortimer authored May 27, 2021
```
Remove python 3.5 support
```
  b9804b3e
- Fix mistake in posix_compliant/script_from_stding modes · 2cea962b
  Duncan Mortimer authored May 27, 2021
```
Resolve testing issues with new bash_cmd
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  2cea962b
- Fix auto queue length determination when an unconfigured queue is specified · db369f11
  Duncan Mortimer authored May 27, 2021
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Add support for host group sub-queues
```
  db369f11
- Linting · ac799a08
  Duncan Mortimer authored May 27, 2021
  
  ac799a08
26 May, 2021 2 commits
- Fix tests when bash not in /bin/bash · 9224448f
  Duncan Mortimer authored May 26, 2021
```
Lint clean ups
Add test for complex parallel submit commands
```
  9224448f
- Lint clean up · 54164ddc
  Duncan Mortimer authored May 26, 2021
  
  54164ddc
19 Nov, 2020 3 commits
- Fix job reporting on Univa · e316800c
  Duncan Mortimer authored Nov 19, 2020
  
  e316800c
- Correctly handle Univa time stamps in qacct output · 2c153eac
  Duncan Mortimer authored Nov 19, 2020
  
  2c153eac
- Add 'exclusive' option for co-pro queues · 3f539ef0
  Duncan Mortimer authored Nov 19, 2020
```
Improve in-YAML docs
```
  3f539ef0
18 Nov, 2020 3 commits
- Lint cleanup · 7426e891
  Duncan Mortimer authored Nov 18, 2020
  
  7426e891
- Add default/priority/group · fea30c47
  Duncan Mortimer authored Nov 18, 2020
  
  fea30c47
- Rename warning > comment to avoid confusion · ba39c90e
  Duncan Mortimer authored Nov 18, 2020
  
  ba39c90e
17 Nov, 2020 2 commits
- Update tests for queue: homed build_queues · 11591972
  Duncan Mortimer authored Nov 17, 2020
  
  11591972
- Prevent duplicate warnings · 6947c791
  Duncan Mortimer authored Nov 17, 2020
```
Output CommentedMap starting at queues:
```
  6947c791
16 Nov, 2020 2 commits
- Switch to ruamel.yaml · 57dd598a
  Duncan Mortimer authored Nov 16, 2020
```
Add comments to captured queue information
Add warnings as comments
Add tests for queue capture
```
  57dd598a
- Rename example_conf to default_conf · 277aa58d
  Duncan Mortimer authored Nov 16, 2020
  
  277aa58d
13 Nov, 2020 1 commit
- Add INSTALL and BUILD.md to setup manifest · 5f724b09
  Duncan Mortimer authored Nov 13, 2020
  
  5f724b09