From 1b99d8a7dc991fb04c767173bbc9e0f4adb5e247 Mon Sep 17 00:00:00 2001
From: Paul McCarthy <pauldmccarthy@gmail.com>
Date: Thu, 11 Jul 2019 17:17:24 +0100
Subject: [PATCH] DOC: Fix rst
---
doc/fsl.rst | 1 +
doc/fsl.transform.affine.rst | 7 +++++++
...ils.transform.rst => fsl.transform.flirt.rst} | 4 ++--
doc/fsl.transform.fnirt.rst | 7 +++++++
doc/fsl.transform.nonlinear.rst | 7 +++++++
doc/fsl.transform.rst | 16 ++++++++++++++++
doc/fsl.transform.x5.rst | 7 +++++++
doc/fsl.utils.rst | 1 -
doc/mock_modules.txt | 1 +
9 files changed, 48 insertions(+), 3 deletions(-)
create mode 100644 doc/fsl.transform.affine.rst
rename doc/{fsl.utils.transform.rst => fsl.transform.flirt.rst} (57%)
create mode 100644 doc/fsl.transform.fnirt.rst
create mode 100644 doc/fsl.transform.nonlinear.rst
create mode 100644 doc/fsl.transform.rst
create mode 100644 doc/fsl.transform.x5.rst
diff --git a/doc/fsl.rst b/doc/fsl.rst
index fb702bca8..c92138a86 100644
--- a/doc/fsl.rst
+++ b/doc/fsl.rst
@@ -7,6 +7,7 @@
fsl.data
fsl.scripts
fsl.utils
+ fsl.transform
fsl.version
fsl.wrappers
diff --git a/doc/fsl.transform.affine.rst b/doc/fsl.transform.affine.rst
new file mode 100644
index 000000000..93792be10
--- /dev/null
+++ b/doc/fsl.transform.affine.rst
@@ -0,0 +1,7 @@
+``fsl.transform.affine``
+========================
+
+.. automodule:: fsl.transform.affine
+ :members:
+ :undoc-members:
+ :show-inheritance:
diff --git a/doc/fsl.utils.transform.rst b/doc/fsl.transform.flirt.rst
similarity index 57%
rename from doc/fsl.utils.transform.rst
rename to doc/fsl.transform.flirt.rst
index b21d270e9..836a82f49 100644
--- a/doc/fsl.utils.transform.rst
+++ b/doc/fsl.transform.flirt.rst
@@ -1,7 +1,7 @@
-``fsl.utils.transform``
+``fsl.transform.flirt``
=======================
-.. automodule:: fsl.utils.transform
+.. automodule:: fsl.transform.flirt
:members:
:undoc-members:
:show-inheritance:
diff --git a/doc/fsl.transform.fnirt.rst b/doc/fsl.transform.fnirt.rst
new file mode 100644
index 000000000..4a1efe50f
--- /dev/null
+++ b/doc/fsl.transform.fnirt.rst
@@ -0,0 +1,7 @@
+``fsl.transform.fnirt``
+=======================
+
+.. automodule:: fsl.transform.fnirt
+ :members:
+ :undoc-members:
+ :show-inheritance:
diff --git a/doc/fsl.transform.nonlinear.rst b/doc/fsl.transform.nonlinear.rst
new file mode 100644
index 000000000..d137a81f3
--- /dev/null
+++ b/doc/fsl.transform.nonlinear.rst
@@ -0,0 +1,7 @@
+``fsl.transform.nonlinear``
+===========================
+
+.. automodule:: fsl.transform.nonlinear
+ :members:
+ :undoc-members:
+ :show-inheritance:
diff --git a/doc/fsl.transform.rst b/doc/fsl.transform.rst
new file mode 100644
index 000000000..fdbd859ad
--- /dev/null
+++ b/doc/fsl.transform.rst
@@ -0,0 +1,16 @@
+``fsl.transform``
+=================
+
+.. toctree::
+ :hidden:
+
+ fsl.transform.affine
+ fsl.transform.flirt
+ fsl.transform.fnirt
+ fsl.transform.nonlinear
+ fsl.transform.x5
+
+.. automodule:: fsl.transform
+ :members:
+ :undoc-members:
+ :show-inheritance:
diff --git a/doc/fsl.transform.x5.rst b/doc/fsl.transform.x5.rst
new file mode 100644
index 000000000..9b6978cf7
--- /dev/null
+++ b/doc/fsl.transform.x5.rst
@@ -0,0 +1,7 @@
+``fsl.transform.x5``
+====================
+
+.. automodule:: fsl.transform.x5
+ :members:
+ :undoc-members:
+ :show-inheritance:
diff --git a/doc/fsl.utils.rst b/doc/fsl.utils.rst
index 5722c7eb4..f253bac7e 100644
--- a/doc/fsl.utils.rst
+++ b/doc/fsl.utils.rst
@@ -23,7 +23,6 @@
fsl.utils.run
fsl.utils.settings
fsl.utils.tempdir
- fsl.utils.transform
fsl.utils.weakfuncref
.. automodule:: fsl.utils
diff --git a/doc/mock_modules.txt b/doc/mock_modules.txt
index 8bb6c230a..07e5f8d09 100644
--- a/doc/mock_modules.txt
+++ b/doc/mock_modules.txt
@@ -1,4 +1,5 @@
deprecation
+h5py
nibabel
nibabel.fileslice
nibabel.freesurfer
--
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