From 5bbde65b9d72448ca1566d2fe52142e3e1c85eca Mon Sep 17 00:00:00 2001
From: Paul McCarthy <pauldmccarthy@gmail.com>
Date: Fri, 12 Nov 2021 10:22:35 +0000
Subject: [PATCH] BF: Input files for wrapper functions were not being deleted
---
fsl/wrappers/wrapperutils.py | 6 ++++--
1 file changed, 4 insertions(+), 2 deletions(-)
diff --git a/fsl/wrappers/wrapperutils.py b/fsl/wrappers/wrapperutils.py
index ac647674b..260841d4b 100644
--- a/fsl/wrappers/wrapperutils.py
+++ b/fsl/wrappers/wrapperutils.py
@@ -1047,7 +1047,8 @@ def fileOrImage(*args, **kwargs):
# in-memory image - we have
# to save it out to a file
if infile is None:
- hd, infile = tempfile.mkstemp(fslimage.defaultExt())
+ hd, infile = tempfile.mkstemp(fslimage.defaultExt(),
+ dir=workdir)
os.close(hd)
val.to_filename(infile)
@@ -1110,7 +1111,7 @@ def fileOrArray(*args, **kwargs):
infile = None
if isinstance(val, np.ndarray):
- hd, infile = tempfile.mkstemp('.txt')
+ hd, infile = tempfile.mkstemp('.txt', dir=workdir)
os.close(hd)
np.savetxt(infile, val, fmt='%0.18f')
@@ -1176,6 +1177,7 @@ def fileOrText(*args, **kwargs):
if not isinstance(val, pathlib.Path):
with tempfile.NamedTemporaryFile(mode='w',
suffix='.txt',
+ dir=workdir,
delete=False) as f:
f.write(val)
infile = f.name
--
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