From 60ca36b21b47fdf6f7a50cb6d990987072ecc0b2 Mon Sep 17 00:00:00 2001
From: Paul McCarthy <pauldmccarthy@gmail.com>
Date: Fri, 13 Mar 2020 15:18:48 +0000
Subject: [PATCH] ENH: new prelude wrapper
---
fsl/wrappers/__init__.py | 1 +
fsl/wrappers/fugue.py | 21 +++++++++++++++++++++
2 files changed, 22 insertions(+)
diff --git a/fsl/wrappers/__init__.py b/fsl/wrappers/__init__.py
index 453313f2c..23f45281a 100644
--- a/fsl/wrappers/__init__.py
+++ b/fsl/wrappers/__init__.py
@@ -95,6 +95,7 @@ from .fnirt import (fnirt, # noqa
convertwarp)
from .fslmaths import (fslmaths,) # noqa
from .fugue import (fugue, # noqa
+ prelude,
sigloss)
from .melodic import (melodic, # noqa
fsl_regfilt)
diff --git a/fsl/wrappers/fugue.py b/fsl/wrappers/fugue.py
index ced52f226..8b61f030c 100644
--- a/fsl/wrappers/fugue.py
+++ b/fsl/wrappers/fugue.py
@@ -62,3 +62,24 @@ def sigloss(input, sigloss, **kwargs):
cmd += wutils.applyArgStyle('--', valmap=valmap, **kwargs)
return cmd
+
+
+@wutils.fileOrImage('complex', 'abs', 'phase', 'mask',
+ 'out', 'unwrap', 'savemask', 'rawphase', 'labels')
+@wutils.fslwrapper
+def prelude(**kwargs):
+ """Wrapper for the ``sigloss`` command."""
+
+ valmap = {
+ 'labelslices' : wutils.SHOW_IF_TRUE,
+ 'slices' : wutils.SHOW_IF_TRUE,
+ 'force3D' : wutils.SHOW_IF_TRUE,
+ 'removeramps' : wutils.SHOW_IF_TRUE,
+ 'verbose' : wutils.SHOW_IF_TRUE,
+ }
+
+ cmd = ['prelude'] + wutils.applyArgStyle('--=',
+ valmap=valmap,
+ **kwargs)
+
+ return cmd
--
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