From 6e91d3fb3d62fdf67aca21d48fc35ea7a032c91a Mon Sep 17 00:00:00 2001
From: Paul McCarthy <pauldmccarthy@gmail.com>
Date: Fri, 27 Mar 2020 16:58:09 +0000
Subject: [PATCH] RF: Handle -t/-K for 3D images/single label
---
fsl/wrappers/fslstats.py | 10 +++++-----
1 file changed, 5 insertions(+), 5 deletions(-)
diff --git a/fsl/wrappers/fslstats.py b/fsl/wrappers/fslstats.py
index f77a36723..95ade4efb 100644
--- a/fsl/wrappers/fslstats.py
+++ b/fsl/wrappers/fslstats.py
@@ -95,9 +95,9 @@ class fslstats(object):
The ``fslstats`` command can be executed via the :meth:`run` method.
- Normally, the results will be returned as a list of floating point
- numbers. Pre-options will affect the structure of the return value - see
- :meth:`__init__` for details.
+ Normally, the results will be returned as a scalar floating point number,
+ or a ``numpy`` array. Pre-options will affect the structure of the return
+ value - see :meth:`__init__` for details.
Attribute and method calls can be chained together, so a complete
@@ -162,7 +162,7 @@ class fslstats(object):
def __getattr__(self, name):
- """Intercepts attribute accesses and stages ``fslstats`` command-line
+ """Intercepts attribute accesses and accumulates ``fslstats`` command-line
flags accordingly.
"""
@@ -238,7 +238,7 @@ class fslstats(object):
# reshape the result into
# (nvals, nvols, nlbls)
nlbls = int(len(result) / nvols)
- result = result.reshape((nvols, nlbls, -1))
+ result = result.reshape((nvols, nlbls, -1)).squeeze()
# Scalar - use numpy indexing weirdness
# to get our single value out.
--
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