From 806e5dcdba1caaa96a6c267c516312fb51172ecb Mon Sep 17 00:00:00 2001
From: Michiel Cottaar <MichielCottaar@protonmail.com>
Date: Thu, 19 Sep 2019 14:20:00 +0100
Subject: [PATCH] REF: recalled _prepareArgs as prepareArgs
---
fsl/utils/fslsub.py | 4 ++--
fsl/utils/run.py | 6 +++---
2 files changed, 5 insertions(+), 5 deletions(-)
diff --git a/fsl/utils/fslsub.py b/fsl/utils/fslsub.py
index 81a1fc942..2037a87a9 100644
--- a/fsl/utils/fslsub.py
+++ b/fsl/utils/fslsub.py
@@ -104,7 +104,7 @@ def submit(*command,
:return: string of submitted job id
"""
- from fsl.utils.run import runfsl, _prepareArgs
+ from fsl.utils.run import runfsl, prepareArgs
base_cmd = ['fsl_sub']
@@ -135,7 +135,7 @@ def submit(*command,
base_cmd.append('-s')
base_cmd.extend(multi_threaded)
- base_cmd.extend(_prepareArgs(command))
+ base_cmd.extend(prepareArgs(command))
return runfsl(*base_cmd).strip()
diff --git a/fsl/utils/run.py b/fsl/utils/run.py
index 3fb7d979e..12cc03606 100644
--- a/fsl/utils/run.py
+++ b/fsl/utils/run.py
@@ -72,7 +72,7 @@ def dryrun(*args):
DRY_RUN = oldval
-def _prepareArgs(args):
+def prepareArgs(args):
"""Used by the :func:`run` function. Ensures that the given arguments is a
list of strings.
"""
@@ -179,7 +179,7 @@ def run(*args, **kwargs):
logStdout = log .get('stdout', None)
logStderr = log .get('stderr', None)
logCmd = log .get('cmd', None)
- args = _prepareArgs(args)
+ args = prepareArgs(args)
if not bool(submit):
submit = None
@@ -345,7 +345,7 @@ def runfsl(*args, **kwargs):
if not prefixes:
raise FSLNotPresent('$FSLDIR is not set - FSL cannot be found!')
- args = _prepareArgs(args)
+ args = prepareArgs(args)
for prefix in prefixes:
cmdpath = op.join(prefix, args[0])
if op.isfile(cmdpath):
--
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