From a39249a532a7cd60828b27efdea3d2ce35ac8a1b Mon Sep 17 00:00:00 2001
From: Matthew Webster <mwebster@fmrib.ox.ac.uk>
Date: Mon, 29 Jan 2018 14:51:49 +0000
Subject: [PATCH] Auto install links to scripts
---
.conda/post-link.sh | 8 ++++++++
.conda/pre-unlink.sh | 5 +++++
setup.py | 2 +-
3 files changed, 14 insertions(+), 1 deletion(-)
create mode 100755 .conda/post-link.sh
create mode 100755 .conda/pre-unlink.sh
diff --git a/.conda/post-link.sh b/.conda/post-link.sh
new file mode 100755
index 000000000..a0f609571
--- /dev/null
+++ b/.conda/post-link.sh
@@ -0,0 +1,8 @@
+if [ -z ${FSLDIR} ]; then exit; fi
+if [ ! -d ${FSLDIR}/bin ]; then exit; fi
+scripts="atlasquery imcp immv imglob"
+for script in $scripts; do
+ if [ -f ${FSLDIR}/bin/${file} ]; then rm ${FSLDIR}/bin/${file}; fi
+ ln -s ${PREFIX}/bin/${file} ${FSLDIR}/bin/${file}
+done
+
diff --git a/.conda/pre-unlink.sh b/.conda/pre-unlink.sh
new file mode 100755
index 000000000..4a0dc2779
--- /dev/null
+++ b/.conda/pre-unlink.sh
@@ -0,0 +1,5 @@
+if [ -z ${FSLDIR} ]; then exit; fi
+scripts="atlasquery imcp immv imglob"
+for script in $scripts; do
+ if [ -f ${FSLDIR}/bin/${file} ]; then rm ${FSLDIR}/bin/${file}; fi
+done
diff --git a/setup.py b/setup.py
index e9fa4e658..356857dd6 100644
--- a/setup.py
+++ b/setup.py
@@ -127,7 +127,7 @@ setup(
'immv = fsl.scripts.immv:main',
'imcp = fsl.scripts.imcp:main',
'imglob = fsl.scripts.imglob:main',
- 'atlasq = fsl.scripts.atlasq:main',
+ 'atlasquery = fsl.scripts.atlasq:main',
]
}
)
--
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