Commit a84269aa authored by Paul McCarthy's avatar Paul McCarthy 🚵
Browse files

TEST: adjust fast test

parent 0a27fcc5
...@@ -327,13 +327,16 @@ def test_fast(): ...@@ -327,13 +327,16 @@ def test_fast():
cmd = op.join(fsldir, 'bin', 'fast') cmd = op.join(fsldir, 'bin', 'fast')
result = fw.fast('input', 'myseg', n_classes=3) result = fw.fast('input', 'myseg', n_classes=3)
expected = [cmd, '-v', '--out=myseg', '--class=3', 'input'] expected = [cmd, '--out=myseg', '--class=3', 'input']
assert result.stdout[0] == ' '.join(expected) assert result.stdout[0] == ' '.join(expected)
result = fw.fast(('in1', 'in2', 'in3'), 'myseg', n_classes=3) result = fw.fast(('in1', 'in2', 'in3'), 'myseg', n_classes=3)
expected = [cmd, '-v', '--out=myseg', '--class=3', 'in1', 'in2', 'in3'] expected = [cmd, '--out=myseg', '--class=3', 'in1', 'in2', 'in3']
assert result.stdout[0] == ' '.join(expected)
result = fw.fast(('in1', 'in2', 'in3'), 'myseg', n_classes=3, verbose=True)
expected = [cmd, '--out=myseg', '--class=3', '--verbose', 'in1', 'in2', 'in3']
assert result.stdout[0] == ' '.join(expected) assert result.stdout[0] == ' '.join(expected)
...@@ -390,10 +393,10 @@ def test_tbss(): ...@@ -390,10 +393,10 @@ def test_tbss():
def test_fsl_prepare_fieldmap(): def test_fsl_prepare_fieldmap():
with asrt.disabled(), run.dryrun(), mockFSLDIR(bin=('fsl_prepare_fieldmap',)) as fsldir: with asrt.disabled(), run.dryrun(), mockFSLDIR(bin=('fsl_prepare_fieldmap',)) as fsldir:
fpf = op.join(fsldir, 'bin', 'fsl_prepare_fieldmap') fpf = op.join(fsldir, 'bin', 'fsl_prepare_fieldmap')
result = fw.fsl_prepare_fieldmap(phase_image='ph', result = fw.fsl_prepare_fieldmap(phase_image='ph',
magnitude_image='mag', magnitude_image='mag',
out_image='out', out_image='out',
deltaTE=2.46, deltaTE=2.46,
nocheck=True) nocheck=True)
expected = (fpf, ('SIEMENS', 'ph', 'mag', 'out', '2.46', '--nocheck')) expected = (fpf, ('SIEMENS', 'ph', 'mag', 'out', '2.46', '--nocheck'))
assert checkResult(result.stdout[0], *expected) assert checkResult(result.stdout[0], *expected)
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