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FSL
fslpy
Commits
a84269aa
Commit
a84269aa
authored
Jun 23, 2021
by
Paul McCarthy
🚵
Browse files
TEST: adjust fast test
parent
0a27fcc5
Changes
1
Hide whitespace changes
Inline
Side-by-side
tests/test_wrappers/test_wrappers.py
View file @
a84269aa
...
@@ -327,13 +327,16 @@ def test_fast():
...
@@ -327,13 +327,16 @@ def test_fast():
cmd
=
op
.
join
(
fsldir
,
'bin'
,
'fast'
)
cmd
=
op
.
join
(
fsldir
,
'bin'
,
'fast'
)
result
=
fw
.
fast
(
'input'
,
'myseg'
,
n_classes
=
3
)
result
=
fw
.
fast
(
'input'
,
'myseg'
,
n_classes
=
3
)
expected
=
[
cmd
,
'-v'
,
'--out=myseg'
,
'--class=3'
,
'input'
]
expected
=
[
cmd
,
'--out=myseg'
,
'--class=3'
,
'input'
]
assert
result
.
stdout
[
0
]
==
' '
.
join
(
expected
)
assert
result
.
stdout
[
0
]
==
' '
.
join
(
expected
)
result
=
fw
.
fast
((
'in1'
,
'in2'
,
'in3'
),
'myseg'
,
n_classes
=
3
)
result
=
fw
.
fast
((
'in1'
,
'in2'
,
'in3'
),
'myseg'
,
n_classes
=
3
)
expected
=
[
cmd
,
'-v'
,
'--out=myseg'
,
'--class=3'
,
'in1'
,
'in2'
,
'in3'
]
expected
=
[
cmd
,
'--out=myseg'
,
'--class=3'
,
'in1'
,
'in2'
,
'in3'
]
assert
result
.
stdout
[
0
]
==
' '
.
join
(
expected
)
result
=
fw
.
fast
((
'in1'
,
'in2'
,
'in3'
),
'myseg'
,
n_classes
=
3
,
verbose
=
True
)
expected
=
[
cmd
,
'--out=myseg'
,
'--class=3'
,
'--verbose'
,
'in1'
,
'in2'
,
'in3'
]
assert
result
.
stdout
[
0
]
==
' '
.
join
(
expected
)
assert
result
.
stdout
[
0
]
==
' '
.
join
(
expected
)
...
@@ -390,10 +393,10 @@ def test_tbss():
...
@@ -390,10 +393,10 @@ def test_tbss():
def
test_fsl_prepare_fieldmap
():
def
test_fsl_prepare_fieldmap
():
with
asrt
.
disabled
(),
run
.
dryrun
(),
mockFSLDIR
(
bin
=
(
'fsl_prepare_fieldmap'
,))
as
fsldir
:
with
asrt
.
disabled
(),
run
.
dryrun
(),
mockFSLDIR
(
bin
=
(
'fsl_prepare_fieldmap'
,))
as
fsldir
:
fpf
=
op
.
join
(
fsldir
,
'bin'
,
'fsl_prepare_fieldmap'
)
fpf
=
op
.
join
(
fsldir
,
'bin'
,
'fsl_prepare_fieldmap'
)
result
=
fw
.
fsl_prepare_fieldmap
(
phase_image
=
'ph'
,
result
=
fw
.
fsl_prepare_fieldmap
(
phase_image
=
'ph'
,
magnitude_image
=
'mag'
,
magnitude_image
=
'mag'
,
out_image
=
'out'
,
out_image
=
'out'
,
deltaTE
=
2.46
,
deltaTE
=
2.46
,
nocheck
=
True
)
nocheck
=
True
)
expected
=
(
fpf
,
(
'SIEMENS'
,
'ph'
,
'mag'
,
'out'
,
'2.46'
,
'--nocheck'
))
expected
=
(
fpf
,
(
'SIEMENS'
,
'ph'
,
'mag'
,
'out'
,
'2.46'
,
'--nocheck'
))
assert
checkResult
(
result
.
stdout
[
0
],
*
expected
)
assert
checkResult
(
result
.
stdout
[
0
],
*
expected
)
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