From a8ed58f3f05057c90bbfbfcd4c17f41126db97a1 Mon Sep 17 00:00:00 2001
From: Paul McCarthy <pauld.mccarthy@gmail.com>
Date: Fri, 16 Oct 2015 17:27:25 +0100
Subject: [PATCH] AtlasPanel works with non-MNI152 overlays, but shows a
warning if NIFTI header does not say that it's in MNI152 space.
---
fsl/data/strings.py | 7 +++----
fsl/fsleyes/controls/atlasinfopanel.py | 18 ++++++++++--------
2 files changed, 13 insertions(+), 12 deletions(-)
diff --git a/fsl/data/strings.py b/fsl/data/strings.py
index 84de93380..716fefb07 100644
--- a/fsl/data/strings.py
+++ b/fsl/data/strings.py
@@ -76,10 +76,9 @@ messages = TypeDict({
'AtlasOverlayPanel.loadRegions' : 'Loading region descriptions for {} ...',
- 'AtlasInfoPanel.notMNISpace' : 'Atlas lookup can only be performed on '
- 'images oriented to MNI152 space',
-
- 'AtlasInfoPanel.noReference' : 'No reference image available',
+ 'AtlasInfoPanel.notMNISpace' : 'The selected overlay does not appear to '
+ 'be in MNI152 space - atlas '
+ 'information might not be accurate!' ,
'AtlasInfoPanel.chooseAnAtlas' : 'Choose an atlas!',
'AtlasInfoPanel.atlasDisabled' : 'Atlases are not available',
diff --git a/fsl/fsleyes/controls/atlasinfopanel.py b/fsl/fsleyes/controls/atlasinfopanel.py
index d488b8d53..367e43d5b 100644
--- a/fsl/fsleyes/controls/atlasinfopanel.py
+++ b/fsl/fsleyes/controls/atlasinfopanel.py
@@ -154,18 +154,17 @@ class AtlasInfoPanel(fslpanel.FSLEyesPanel):
text = self.__infoPanel
overlay = self._displayCtx.getReferenceImage(
self._displayCtx.getSelectedOverlay())
+
+ topText = None
if len(atlases.listAtlases()) == 0:
text.SetPage(strings.messages['AtlasInfoPanel.atlasDisabled'])
return
- if overlay is None:
- text.SetPage(strings.messages['AtlasInfoPanel.noReference'])
- return
-
- if overlay.getXFormCode() != constants.NIFTI_XFORM_MNI_152:
- text.SetPage(strings.messages['AtlasInfoPanel.notMNISpace'])
- return
+ if overlay is None or \
+ overlay.getXFormCode() != constants.NIFTI_XFORM_MNI_152:
+ topText = strings.messages['AtlasInfoPanel.notMNISpace']
+ topText = '<font color="red">{}</font>'.format(topText)
if len(self.__enabledAtlases) == 0:
text.SetPage(strings.messages['AtlasInfoPanel.chooseAnAtlas'])
@@ -175,7 +174,10 @@ class AtlasInfoPanel(fslpanel.FSLEyesPanel):
loc = self._displayCtx.location
loc = opts.transformCoords([loc], 'display', 'world')[0]
- lines = []
+ lines = []
+
+ if topText is not None:
+ lines.append(topText)
# Three types of hyperlink:
# - one for complete (summary) label atlases,
--
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