From ad7564036cf62ec4195d77e961298d5a97ad239d Mon Sep 17 00:00:00 2001
From: Paul McCarthy <pauld.mccarthy@gmail.com>
Date: Sun, 22 Jan 2017 20:17:40 +0000
Subject: [PATCH] Fixes - nibabel header['sform'] returns a numpy scalar
---
fsl/data/image.py | 10 +++-------
1 file changed, 3 insertions(+), 7 deletions(-)
diff --git a/fsl/data/image.py b/fsl/data/image.py
index 08543981b..b6dafec10 100644
--- a/fsl/data/image.py
+++ b/fsl/data/image.py
@@ -345,7 +345,7 @@ class Nifti(notifier.Notifier):
'changed for an ANALYZE image')
header = self.header
- sformCode = header['sform_code']
+ sformCode = int(header['sform_code'])
if sformCode == constants.NIFTI_XFORM_UNKNOWN:
sformCode = constants.NIFTI_XFORM_ALIGNED_ANAT
@@ -729,10 +729,6 @@ class Image(Nifti):
Nifti.__init__(self, nibImage.get_header())
- print name
- print self.voxToWorldMat
-
-
self.name = name
self.__lName = '{}_{}'.format(id(self), self.name)
self.__dataSource = dataSource
@@ -852,8 +848,8 @@ class Image(Nifti):
Nifti.voxToWorldMat.fset(self, xform)
- xform = self.voxToWorldMat
- code = self.header['sform_code']
+ xform = self.voxToWorldMat
+ code = int(self.header['sform_code'])
self.__nibImage.set_sform(xform, code)
--
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