From bd83075c2c36f1c54b951ac43870695c836c8610 Mon Sep 17 00:00:00 2001
From: Michiel Cottaar <MichielCottaar@protonmail.com>
Date: Wed, 9 Feb 2022 15:40:28 +0000
Subject: [PATCH] --imain in topup can take multiple filenames
---
fsl/wrappers/eddy.py | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/fsl/wrappers/eddy.py b/fsl/wrappers/eddy.py
index 53a90b9ca..27570d1fa 100644
--- a/fsl/wrappers/eddy.py
+++ b/fsl/wrappers/eddy.py
@@ -92,7 +92,8 @@ def applytopup(imain, datain, index, **kwargs):
}
asrt.assertFileExists(datain)
- asrt.assertIsNifti(imain)
+ for fn in imain.split(','):
+ asrt.assertIsNifti(fn)
cmd = [
'applytopup', '--imain={}'.format(imain),
--
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