From d2f522f6bce931d96558a5da90d3b21937e9e06b Mon Sep 17 00:00:00 2001
From: Paul McCarthy <pauldmccarthy@gmail.com>
Date: Mon, 16 Mar 2020 15:38:31 +0000
Subject: [PATCH] ENH: new applyxfm4D wrapper
---
fsl/wrappers/__init__.py | 1 +
fsl/wrappers/flirt.py | 20 ++++++++++++++++++++
2 files changed, 21 insertions(+)
diff --git a/fsl/wrappers/__init__.py b/fsl/wrappers/__init__.py
index 23f45281a..5e1f61e89 100644
--- a/fsl/wrappers/__init__.py
+++ b/fsl/wrappers/__init__.py
@@ -87,6 +87,7 @@ from .fsl_anat import (fsl_anat,) # noqa
from .flirt import (flirt, # noqa
invxfm,
applyxfm,
+ applyxfm4D,
concatxfm,
mcflirt)
from .fnirt import (fnirt, # noqa
diff --git a/fsl/wrappers/flirt.py b/fsl/wrappers/flirt.py
index 8b5d1d526..df7eb2722 100644
--- a/fsl/wrappers/flirt.py
+++ b/fsl/wrappers/flirt.py
@@ -14,6 +14,7 @@ tools.
flirt
applyxfm
+ applyxfm4D
invxfm
concatxfm
mcflirt
@@ -70,6 +71,25 @@ def applyxfm(src, ref, mat, out, interp='spline', **kwargs):
**kwargs)
+@wutils.fileOrArray('mat')
+@wutils.fileOrImage('src', 'ref', 'out')
+@wutils.fslwrapper
+def applyxfm4D(src, ref, out, mat, **kwargs):
+ """Wrapper for the ``applyxfm4D`` command. """
+
+ asrt.assertIsNifti(src, ref)
+
+ valmap = {
+ 'singlematrix' : wutils.SHOW_IF_TRUE,
+ 'fourdigit' : wutils.SHOW_IF_TRUE,
+ }
+
+ cmd = ['applyxfm4D', src, ref, out, mat]
+ cmd += wutils.applyArgStyle('-', valmap=valmap, **kwargs)
+
+ return cmd
+
+
@wutils.fileOrArray()
@wutils.fslwrapper
def invxfm(inmat, omat):
--
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