From fac476102eea90ee2bf6621abe049d4cfc8d84f8 Mon Sep 17 00:00:00 2001
From: Michiel Cottaar <MichielCottaar@protonmail.com>
Date: Thu, 19 Sep 2019 13:56:10 +0100
Subject: [PATCH] BUG: use _prepareArgs to unpack input arguments
---
fsl/utils/fslsub.py | 13 ++++++++-----
1 file changed, 8 insertions(+), 5 deletions(-)
diff --git a/fsl/utils/fslsub.py b/fsl/utils/fslsub.py
index 713826a8c..81a1fc942 100644
--- a/fsl/utils/fslsub.py
+++ b/fsl/utils/fslsub.py
@@ -55,7 +55,7 @@ import importlib
log = logging.getLogger(__name__)
-def submit(command,
+def submit(*command,
minutes=None,
queue=None,
architecture=None,
@@ -70,9 +70,12 @@ def submit(command,
flags=False,
multi_threaded=None,
verbose=False):
- """Submits a given command to the cluster
+ """
+ Submits a given command to the cluster
+
+ You can pass the command and arguments as a single string, or as a regular or unpacked sequence.
- :arg command: single string with the job command
+ :arg command: string or regular/unpacked sequence of strings with the job command
:arg minutes: Estimated job length in minutes, used to auto-set
queue name
:arg queue: Explicitly sets the queue name
@@ -101,7 +104,7 @@ def submit(command,
:return: string of submitted job id
"""
- from fsl.utils.run import runfsl
+ from fsl.utils.run import runfsl, _prepareArgs
base_cmd = ['fsl_sub']
@@ -132,7 +135,7 @@ def submit(command,
base_cmd.append('-s')
base_cmd.extend(multi_threaded)
- base_cmd.append(command)
+ base_cmd.extend(_prepareArgs(command))
return runfsl(*base_cmd).strip()
--
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