Commits · 2.0.0 · FSL / fslpy

29 Mar, 2019 35 commits
- Merge branch 'mnt/v2.0' into 'v2.0' · 160e2226
  Paul McCarthy authored Mar 29, 2019
```
Mnt/v2.0

See merge request fsl/fslpy!110
```
  160e2226
- MNT: version · 68cb0e0a
  Paul McCarthy authored Mar 29, 2019
  
  68cb0e0a
- BUG: by default update variables for parent · 35f93735
  Michiel Cottaar authored Mar 19, 2019 and Paul McCarthy committed Mar 29, 2019
  
  35f93735
- DOC: readme · 843304c4
  Paul McCarthy authored Mar 29, 2019
  
  843304c4
- MNT: manifest · 6d6dd0b2
  Paul McCarthy authored Mar 29, 2019
  
  6d6dd0b2
- MNT: copyright notice · 0ebeb3b9
  Paul McCarthy authored Mar 29, 2019
  
  0ebeb3b9
- TEST: Unit test fsl_anat wrapper · f7ce79a0
  Paul McCarthy authored Mar 29, 2019
  
  f7ce79a0
- Merge branch 'enh/imagetree' into 'master' · eab4ee98
  Paul McCarthy authored Mar 29, 2019
```
filetree query

See merge request fsl/fslpy!100
```
  eab4ee98
- DOC: optimistic changelog · dc8fa25c
  Paul McCarthy authored Mar 29, 2019
  
  dc8fa25c
- DOC: rst stubs for query module, fix to changelog · fba08d93
  Paul McCarthy authored Mar 29, 2019
  
  fba08d93
- TEST: more query tests · 6ebae621
  Paul McCarthy authored Mar 29, 2019
  
  6ebae621
- RF,BF: New asarray option to query method which defaults to false - query will · 2d0249c1
  Paul McCarthy authored Mar 29, 2019
```
default to returning a flat list of matches. subtree-related fixes to scan
function
```
  2d0249c1
- TEST: unit tests for filetree.query · d7917456
  Paul McCarthy authored Mar 29, 2019
  
  d7917456
- RF,DOC: Class documentation. Minor refactorings. Added comparison/equality · 80c379da
  Paul McCarthy authored Mar 28, 2019
```
operators to Match class so it can be ordered. Protect Match attributes via
@property
```
  80c379da
- ENH: Mesh name can be updated · 69b5c54c
  Paul McCarthy authored Mar 28, 2019
  
  69b5c54c
- BF: Ensure that data structure returned by query.variables method cannot · 34edfae0
  Paul McCarthy authored Mar 06, 2019
```
mutate canonical version
```
  34edfae0
- CI: Atlas data location can be customised with env var · 19571ee6
  Paul McCarthy authored Mar 06, 2019
  
  19571ee6
- DOC: Query method docs, changed MAtch string repr · f456f6bd
  Paul McCarthy authored Mar 06, 2019
  
  f456f6bd
- ENH,RF: Support for optional variables - a value of None is used for matches · 6bd0d7c2
  Paul McCarthy authored Feb 14, 2019
```
for which an optional variable is not present
```
  6bd0d7c2
- ENH: Fleshed out FileTreeQuery implementation. Need to write some tests. · 689f5fc3
  Paul McCarthy authored Feb 06, 2019
  
  689f5fc3
- BF: Escape period characters in regexp so they are interpreted as literal · 7db08c9c
  Paul McCarthy authored Feb 05, 2019
  
  7db08c9c
- RF: Remove FileTree.short_names, as I need a list of the short names that · 6a2d81a3
  Paul McCarthy authored Feb 05, 2019
```
actually exist on disk (and corrsepond to files).
```
  6a2d81a3
- BF: Missing import · 56cd55ef
  Paul McCarthy authored Jan 28, 2019
  
  56cd55ef
- DOC: Changelog · adfab992
  Paul McCarthy authored Jan 28, 2019
  
  adfab992
- TEST: Unit test for commonBase · 72f03764
  Paul McCarthy authored Jan 28, 2019
  
  72f03764
- BF: Adjustments to commonBase function · 6ae4910d
  Paul McCarthy authored Jan 28, 2019
  
  6ae4910d
- ENH: New FileTree method, just a convenience to get all short names · c63487f8
  Paul McCarthy authored Jan 28, 2019
  
  c63487f8
- ENH: New function in path module - commonBase · 7fd39ba4
  Paul McCarthy authored Jan 27, 2019
  
  7fd39ba4
- ENH: Minor tweaks to make FileTreeQuery functional · 4e87cbf9
  Paul McCarthy authored Jan 18, 2019
  
  4e87cbf9
- ENH: New FileTreeQuery class, for searching for files in a FileTree · 6e3589c0
  Paul McCarthy authored Jan 16, 2019
  
  6e3589c0
- ENH: New convnience function to list all known trees · e2bfd0d9
  Paul McCarthy authored Jan 16, 2019
  
  e2bfd0d9
- Merge branch 'fslsub_update' into 'master' · dc3ee77e
  Paul McCarthy authored Mar 29, 2019
```
Fslsub update

See merge request fsl/fslpy!105
```
  dc3ee77e
- ENH: allow potentially nested tuple of job ids in wait() · 67b37e79
  Michiel Cottaar authored Mar 29, 2019
  
  67b37e79
- BUG: set correct __file__ when executing script · df5c1cda
  Michiel Cottaar authored Mar 29, 2019
  
  df5c1cda
- DOC: Corrected fsl_sub return type · 5b0abbd9
  Michiel Cottaar authored Mar 29, 2019
  
  5b0abbd9
19 Mar, 2019 4 commits
- Merge branch 'expand_tree2' into 'master' · ffb2c5c2
  Paul McCarthy authored Mar 19, 2019
```
Expand trees

See merge request fsl/fslpy!104
```
  ffb2c5c2
- BUG: fix typo in variable name · 1b746d41
  Michiel Cottaar authored Mar 19, 2019
  
  1b746d41
- ENH: added HCP label GIFTI & CIFTI files · 67efceb7
  Michiel Cottaar authored Mar 15, 2019
  
  67efceb7
- ENH: added resting state output to HCP directory tree · 5f9652dd
  Michiel Cottaar authored Mar 13, 2019
  
  5f9652dd
13 Mar, 2019 1 commit
- Merge branch 'various_fixes' into 'master' · 1b98cbce
  Paul McCarthy authored Mar 13, 2019
```
Various fixes

See merge request fsl/fslpy!103
```
  1b98cbce