Commits · 6d5f1a9a477932b428998aafe7dc55d89c100198 · FSL / fslpy

20 Oct, 2020 13 commits
- MNT: version · 6d5f1a9a
  Paul McCarthy authored Oct 20, 2020
  
  6d5f1a9a
- Merge branch 'enh/tbss_wrappers' into 'master' · 9d8fb91a
  Paul McCarthy authored Oct 20, 2020
```
Enh/tbss wrappers

See merge request fsl/fslpy!260
```
  9d8fb91a
- DOC: new stub for tbss mod · 2e878669
  Paul McCarthy authored Oct 20, 2020
  
  2e878669
- MNT: Pre-emptive version bump · 065c6b5a
  Paul McCarthy authored Oct 20, 2020
  
  065c6b5a
- RF: Change re-entrancy logic of disabled ctx manager so that, if · bef65e56
  Paul McCarthy authored Oct 20, 2020
  
  bef65e56
- DOC: author [skip ci] · 750e46d8
  Paul McCarthy authored Oct 20, 2020
  
  750e46d8
- DOC: changelog · 7ebfe017
  Paul McCarthy authored Oct 20, 2020
  
  7ebfe017
- TEST: test that assertions are disabled with cmdonly=True · e940d19a
  Paul McCarthy authored Oct 20, 2020
  
  e940d19a
- RF: when cmdonly is used with a wrapper function, assertions are disabled · 3ebae6b1
  Paul McCarthy authored Oct 20, 2020
  
  3ebae6b1
- TEST: Unit tests for tbss wrappers · c63dc780
  Paul McCarthy authored Oct 20, 2020
  
  c63dc780
- RF: Make tbss available at fsl.wrappers package level, minor clean ups · d99bff5f
  Paul McCarthy authored Oct 20, 2020
  
  d99bff5f
- ENH: Wrappers for tbss scripts · 27fb3a8b
  Evan Edmond authored Oct 19, 2020 and Paul McCarthy committed Oct 20, 2020
  
  27fb3a8b
- Merge branch 'mnt/recover' into 'master' · ded1c5af
  Paul McCarthy authored Oct 20, 2020
```
Mnt/recover

See merge request fsl/fslpy!258
```
  ded1c5af
13 Oct, 2020 4 commits
- Merge branch 'rf/cmdonly' into 'master' · 774d7b59
  Paul McCarthy authored Oct 13, 2020
```
Rf/cmdonly

See merge request fsl/fslpy!259
```
  774d7b59
- TEST: Missed assert; make sure fileorthing handles cmdonly, and cmdonly works · 8a9b2c75
  Paul McCarthy authored Oct 13, 2020
```
when combining fileorthing and cmdwrapper
```
  8a9b2c75
- DOC: changelog · df13ddbd
  Paul McCarthy authored Oct 13, 2020
  
  df13ddbd
- RF: FileOrThing passes through if cmdonly=True · 114783ae
  Paul McCarthy authored Oct 13, 2020
  
  114783ae
12 Oct, 2020 5 commits
- Merge branch 'enh/wrapper_cmdonly' into 'master' · 111c77a0
  Paul McCarthy authored Oct 12, 2020
```
Enh/wrapper cmdonly

See merge request fsl/fslpy!257
```
  111c77a0
- TEST: Test cmdonly handling · 4c777562
  Paul McCarthy authored Oct 12, 2020
  
  4c777562
- RF: Implement cmdonly in run.run, rather than in wrappers, so e.g. $FSLDIR is · 1a2577d7
  Paul McCarthy authored Oct 12, 2020
```
correctly prepended.
```
  1a2577d7
- DOC: changelog · 1f305dc9
  Paul McCarthy authored Oct 12, 2020
  
  1f305dc9
- ENH: cmdwrapper/fslwrapper-wrapped functions accept a 'cmdonly' argument, which · bf920d3c
  Paul McCarthy authored Oct 12, 2020
```
gives access to the generated command, instead of it being run
```
  bf920d3c
08 Oct, 2020 6 commits
- Merge branch 'bf/decompose' into 'master' · cb3fd7f2
  Paul McCarthy authored Oct 08, 2020
```
Bf/decompose

See merge request fsl/fslpy!255
```
  cb3fd7f2
- TEST: adjust [de]compose test · 0084f652
  Paul McCarthy authored Oct 08, 2020
  
  0084f652
- DOC: changelog · 851ac699
  Paul McCarthy authored Oct 08, 2020
  
  851ac699
- TEST: Add test case with shear component · 2920116b
  Paul McCarthy authored Oct 08, 2020
  
  2920116b
- ENH: decompose function has option to return shears, and compose function · fcd3b65d
  Paul McCarthy authored Oct 08, 2020
```
accepts shears
```
  fcd3b65d
- BF: Missing normalisation step in decompose · f2e35db5
  Paul McCarthy authored Oct 08, 2020
  
  f2e35db5
22 Sep, 2020 6 commits
- Merge branch 'mnt/version' into 'master' · 86c0fdb0
  Paul McCarthy authored Sep 22, 2020
```
MNT: bump version

See merge request fsl/fslpy!253
```
  86c0fdb0
- MNT: bump version · 1704b2f2
  Paul McCarthy authored Sep 22, 2020
  
  1704b2f2
- Merge branch 'bf/coefficient_field' into 'master' · dfb45639
  Paul McCarthy authored Sep 22, 2020
```
Bf/coefficient field

See merge request fsl/fslpy!252
```
  dfb45639
- DOC: changelog · e8eb9a49
  Paul McCarthy authored Sep 22, 2020
  
  e8eb9a49
- TEST: Test force warp field intent code · 03ba3546
  Paul McCarthy authored Sep 22, 2020
  
  03ba3546
- RF: readFnirt function allows field type to be specified in case file has no · 98a8d42c
  Paul McCarthy authored Sep 22, 2020
```
intent code set
```
  98a8d42c
21 Sep, 2020 4 commits
- DOC: Changelog · 79fd9598
  Paul McCarthy authored Sep 21, 2020
  
  79fd9598
- TEST: Regression test, check coefficient field works with alt ref · b62cfa88
  Paul McCarthy authored Sep 21, 2020
  
  b62cfa88
- RF: Cosmetic linting · f1fbcb32
  Paul McCarthy authored Sep 21, 2020
  
  f1fbcb32
- BF: Adjust fieldToRefMat in case the provided reference image has · dc5eadb2
  Paul McCarthy authored Sep 21, 2020
```
different dimensions than the original reference image
```
  dc5eadb2
18 Aug, 2020 2 commits
- Merge branch 'doc/changelog' into 'master' · be82aa76
  Paul McCarthy authored Aug 18, 2020
```
DOC: changelog [skip ci]

See merge request fsl/fslpy!251
```
  be82aa76
- DOC: changelog [skip ci] · 6d63d8df
  Paul McCarthy authored Aug 18, 2020
  
  6d63d8df