Commits · f456f6bd12c7b9102ce6145512e5916fe7498486 · FSL / fslpy

29 Mar, 2019 18 commits
- DOC: Query method docs, changed MAtch string repr · f456f6bd
  Paul McCarthy authored Mar 06, 2019
  
  f456f6bd
- ENH,RF: Support for optional variables - a value of None is used for matches · 6bd0d7c2
  Paul McCarthy authored Feb 14, 2019
```
for which an optional variable is not present
```
  6bd0d7c2
- ENH: Fleshed out FileTreeQuery implementation. Need to write some tests. · 689f5fc3
  Paul McCarthy authored Feb 06, 2019
  
  689f5fc3
- BF: Escape period characters in regexp so they are interpreted as literal · 7db08c9c
  Paul McCarthy authored Feb 05, 2019
  
  7db08c9c
- RF: Remove FileTree.short_names, as I need a list of the short names that · 6a2d81a3
  Paul McCarthy authored Feb 05, 2019
```
actually exist on disk (and corrsepond to files).
```
  6a2d81a3
- BF: Missing import · 56cd55ef
  Paul McCarthy authored Jan 28, 2019
  
  56cd55ef
- DOC: Changelog · adfab992
  Paul McCarthy authored Jan 28, 2019
  
  adfab992
- TEST: Unit test for commonBase · 72f03764
  Paul McCarthy authored Jan 28, 2019
  
  72f03764
- BF: Adjustments to commonBase function · 6ae4910d
  Paul McCarthy authored Jan 28, 2019
  
  6ae4910d
- ENH: New FileTree method, just a convenience to get all short names · c63487f8
  Paul McCarthy authored Jan 28, 2019
  
  c63487f8
- ENH: New function in path module - commonBase · 7fd39ba4
  Paul McCarthy authored Jan 27, 2019
  
  7fd39ba4
- ENH: Minor tweaks to make FileTreeQuery functional · 4e87cbf9
  Paul McCarthy authored Jan 18, 2019
  
  4e87cbf9
- ENH: New FileTreeQuery class, for searching for files in a FileTree · 6e3589c0
  Paul McCarthy authored Jan 16, 2019
  
  6e3589c0
- ENH: New convnience function to list all known trees · e2bfd0d9
  Paul McCarthy authored Jan 16, 2019
  
  e2bfd0d9
- Merge branch 'fslsub_update' into 'master' · dc3ee77e
  Paul McCarthy authored Mar 29, 2019
```
Fslsub update

See merge request fsl/fslpy!105
```
  dc3ee77e
- ENH: allow potentially nested tuple of job ids in wait() · 67b37e79
  Michiel Cottaar authored Mar 29, 2019
  
  67b37e79
- BUG: set correct __file__ when executing script · df5c1cda
  Michiel Cottaar authored Mar 29, 2019
  
  df5c1cda
- DOC: Corrected fsl_sub return type · 5b0abbd9
  Michiel Cottaar authored Mar 29, 2019
  
  5b0abbd9
19 Mar, 2019 4 commits
- Merge branch 'expand_tree2' into 'master' · ffb2c5c2
  Paul McCarthy authored Mar 19, 2019
```
Expand trees

See merge request fsl/fslpy!104
```
  ffb2c5c2
- BUG: fix typo in variable name · 1b746d41
  Michiel Cottaar authored Mar 19, 2019
  
  1b746d41
- ENH: added HCP label GIFTI & CIFTI files · 67efceb7
  Michiel Cottaar authored Mar 15, 2019
  
  67efceb7
- ENH: added resting state output to HCP directory tree · 5f9652dd
  Michiel Cottaar authored Mar 13, 2019
  
  5f9652dd
13 Mar, 2019 1 commit
- Merge branch 'various_fixes' into 'master' · 1b98cbce
  Paul McCarthy authored Mar 13, 2019
```
Various fixes

See merge request fsl/fslpy!103
```
  1b98cbce
14 Feb, 2019 5 commits
- ENH: added get_all_trees to simplify iterating over variables · 3c678cf9
  Michiel Cottaar authored Feb 14, 2019
  
  3c678cf9
- BUG: ensure that string returned by get_all are path-like · 788e850f
  Michiel Cottaar authored Feb 14, 2019
  
  788e850f
- BUG: don't allow variable to span more than one directory or file name · 4e4189de
  Michiel Cottaar authored Feb 14, 2019
  
  4e4189de
- BUG: actually unset variable if set to None · edfafa71
  Michiel Cottaar authored Feb 14, 2019
  
  edfafa71
- DOC: clarified usage of None in updating · 3a1a890a
  Michiel Cottaar authored Feb 14, 2019
  
  3a1a890a
08 Feb, 2019 3 commits
- Merge branch 'bf/dicom_mmap' into 'master' · 62c51e9e
  Paul McCarthy authored Feb 08, 2019
```
Bf/dicom mmap

See merge request fsl/fslpy!102
```
  62c51e9e
- DOC: Optimistic changelog · 39f41562
  Paul McCarthy authored Feb 08, 2019
  
  39f41562
- BF: Avoid mem-mapping dicom/niftis, as the tempdir will be deleted. · 94b6e749
  Paul McCarthy authored Feb 08, 2019
  
  94b6e749
06 Feb, 2019 2 commits
- Merge branch 'doc_filetree' into 'master' · 5bab6952
  Paul McCarthy authored Feb 06, 2019
```
Add documentation to FileTree

See merge request fsl/fslpy!101
```
  5bab6952
- DOC: added simple pipeline example · 1913e6e7
  Michiel Cottaar authored Feb 06, 2019
  
  1913e6e7
05 Feb, 2019 2 commits
- DOC: added links to the FileTrees on gitlab · eccd886f
  Michiel Cottaar authored Feb 05, 2019
  
  eccd886f
- DOC: many, many fixes to the documentation · e82f538a
  Michiel Cottaar authored Feb 05, 2019
```
Includes now a tutorial on the FileTree format
```
  e82f538a
14 Jan, 2019 5 commits
- Merge branch 'ci/patch_version' into 'master' · 7e34fe6b
  Paul McCarthy authored Jan 14, 2019
```
CI: Change patch_version so it just checks version

See merge request fsl/fslpy!99
```
  7e34fe6b
- CI: Change patch_version so it just checks version · f3db5a05
  Paul McCarthy authored Jan 14, 2019
  
  f3db5a05
- Merge branch 'bf/gifti_readonly' into 'master' · cb88b49a
  Paul McCarthy authored Jan 14, 2019
```
Bf/gifti readonly

See merge request fsl/fslpy!98
```
  cb88b49a
- DOC: typo · f770700c
  Paul McCarthy authored Jan 14, 2019
  
  f770700c
- DOC: changelog · 0a4b6fb6
  Paul McCarthy authored Jan 14, 2019
  
  0a4b6fb6