Commit 19ae29aa authored by Paul McCarthy's avatar Paul McCarthy 🚵
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MNT: Latest field/data coding tables

parent 0765d306
......@@ -18,7 +18,7 @@ encoding_id title availability coded_as structure num_members descript
16 PM choices 0 11 1 5 Colour/shape choices for Prospective Memory test
17 Use of Next button in touchscreen hearing test 0 11 1 1 desc
18 Prospective memory grouping 0 11 1 3 Describes when participants achieved correct answer
19 ICD10 0 41 2 19154 ICD10 - WHO International Classification of Diseases
19 ICD10 0 41 2 19154 ICD10 - WHO International Classification of Diseases<p>ICD-10 codes, terms and text used by permission of WHO, from: International Statistical Classification of Diseases and Related Health Problems, Tenth Revision (ICD-10). Vols 1-3. Geneva, World Health Organization, 1992-2016.
20 ACE-coding20 0 11 1 2 Artificial coding, generated after data collection
21 Yes No or Unknown 0 11 1 3 Artificial coding, generated after data collection
22 ACE-coding22 0 11 1 3 Artificial coding, generated after data collection
......@@ -41,6 +41,7 @@ encoding_id title availability coded_as structure num_members descript
39 Tumour behaviour 0 11 2 8 Tumour behaviour codings used by UK Cancer Registry
41 ICD addendum information 0 41 1 2 Addendum information for ICD9 and ICD10
42 Not-applicable 0 11 1 2 Single option of not-applicable for a numeric question
45 READ medical codes 0 41 1 6196 Please note that this encoding contains public sector information licensed under the Open Government License v3.0 <p> Anyone interested in mapping the READ codes to another coding system (e.g., ICD-10), then may find the TRUD website helpful: ~Ehttps://isd.digital.nhs.uk/~
47 Post-hoc coding 47 0 11 2 41 Artificial coding created post-hoc to characterise free-text reasons entered UKB assessments
49 Post-hoc coding 49 0 11 2 15 Artificial coding created post-hoc to characterise free-text reasons entered UKB assessments
50 Post-hoc coding 50 0 11 2 14 Artificial coding created post-hoc to characterise free-text reasons entered UKB assessments
......@@ -74,7 +75,7 @@ encoding_id title availability coded_as structure num_members descript
100 Pass/Fail test result 0 11 1 2 Results of a pass/fail test
101 Result of a pass/fail/not-tested test 0 11 1 3 Results of a pass/fail test with individuals who were explicitly not-tested indicated.
102 inclusion status 0 11 1 2 Whether a participant was included in a particular subset
123 UK Biobank staff 0 11 1 1069 This is a pseudonymised index of the UK Biobank staff who have had authority to sign-off individual-level records which are included in the UK Biobank core repository. UK Biobank will not publish or reveal the actual identiites of staff.
123 UK Biobank staff 0 11 1 1087 This is a pseudonymised index of the UK Biobank staff who have had authority to sign-off individual-level records which are included in the UK Biobank core repository. UK Biobank will not publish or reveal the actual identiites of staff.
165 Assay correction level 0 11 1 3 Indicates the type of assay correct that was applied to a biochemistry result.
170 Map co-ordinates 0 11 1 1 Special map co-ordinates
196 Result flags for sodium in urine assay 0 41 1 2 Result flags returned by sodium in urine assay when outside of device analytical range.
......@@ -119,7 +120,7 @@ encoding_id title availability coded_as structure num_members descript
237 HES coding for EPISTAT 0 11 1 3 HES coding for EPISTAT
238 HES coding for EPITYPE 0 11 1 6 HES coding for EPITYPE
239 HES coding for PCTCODE and GPPRPCT 0 41 1 417 HES coding for PCTCODE and GPPRPCT
240 OPCS4 operation codes 0 41 2 10928 OPCS4 codes used to specify medical procedures and operations in Health Episode Statistics records
240 OPCS4 operation codes 0 41 2 10928 OPCS4 codes used to specify medical procedures and operations in Health Episode Statistics records<p>The OPCS Classification of Interventions and Procedures, codes, terms and text is Crown copyright (2016) published by Health and Social Care Information Centre, also known as NHS Digital and licensed under the Open Government Licence available at www.nationalarchives.gov.uk/doc/open-government-licence/open-government-licence.htm.
241 SMR1b coding for ADMIMETH 0 41 1 22 SMR1b coding for ADMIMETH<p>It is included as part of ~C264~.
242 SMR1a coding for ADMIMETH 0 41 1 9 SMR1a coding for ADMIMETH<p>It is included as part of ~C264~.
243 SMR1b coding for ADMISORC 0 41 1 64 SMR1b coding for ADMISORC<p>It is included as part of ~C265~.
......@@ -138,7 +139,7 @@ encoding_id title availability coded_as structure num_members descript
256 PEDW coding for DISMETH 0 41 1 6 PEDW coding for DISMETH<p>It is included as part of ~C268~.
257 PEDW coding for TRETSPEF 0 41 1 174 PEDW coding for TRETSPEF<p>It is included as part of ~C269~.
258 PEDW coding for MAINSPEF 0 41 1 93 PEDW coding for MAINSPEF<p>It is included as part of ~C270~.
259 OPCS3 operation codes 0 41 2 1902 OPCS3 codes used to specify medical procedures and operations in Health Episode Statistics records.
259 OPCS3 operation codes 0 41 2 1902 OPCS3 codes used to specify medical procedures and operations in Health Episode Statistics records.<p>The OPCS Classification of Interventions and Procedures, codes, terms and text is Crown copyright (2016) published by Health and Social Care Information Centre, also known as NHS Digital and licensed under the Open Government Licence available at www.nationalarchives.gov.uk/doc/open-government-licence/open-government-licence.htm.
260 PEDW coding for INTMANAG 0 41 1 6 PEDW coding for INTMANAG<p>It is included as part of ~C271~.
261 Death information source 0 11 1 5 Death information is derived from a variety of registries. This encoding identifies the source of particular records.
262 Cancer information source 0 11 1 5 Cancer information is derived from a variety of registries. This encoding identifies the source of particular records.
......@@ -228,6 +229,7 @@ encoding_id title availability coded_as structure num_members descript
573 TAF answer-set 573 0 11 1 7 Multiple choice answers from Thoughts and Feelings questionnaire
584 Prefer not to answer 0 11 1 1 Prefer not to answer scalar question
586 Special undetermined dates 0 51 1 3 Used to indicate uncertainty in dates when work given up.
609 Mapping of self-reported medical conditions to 3-character ICD10 0 11 1 334 Mapping of self-reported medical conditions to 3-character ICD10
616 Happiness level 0 11 1 12 Happiness level on 10 point scale
620 Distension 0 11 1 12 Levels of distension
634 Status with uncertain option 0 11 1 3 Status with uncertain option to allow for cases where situation cannot be resolved on available evidence.
......@@ -249,6 +251,7 @@ encoding_id title availability coded_as structure num_members descript
809 INFO_tfMRI_imperfect 0 11 1 1 INFO_tfMRI_imperfect
810 INFO_dMRI_unusable 0 11 1 8 INFO_dMRI_unusable
811 INFO_dMRI_imperfect 0 11 1 1 INFO_dMRI_imperfect
819 lumped event dates 0 51 1 4 Pseudo dates used to rebadge erroneous and/or sensitive information.
871 Frequency within week/month 0 11 1 8 How often an action is carried out
909 Measurement not returned 0 31 1 1 Used to indicate that an ultrasound measurement was not possible.
913 Days with pain 0 11 1 12 Days with pain in last 10 day period
......@@ -294,10 +297,14 @@ encoding_id title availability coded_as structure num_members descript
1506 Spirometry QC 0 11 1 3 Indicates the esimated of quality of spirometry measurement.
1529 Biochemistry aliquot 0 11 1 5 Aliquot used for blood biochemistry analysis.
1543 Levels of myopia 0 11 1 3 Levels of myopia.
1834 TRUD mapping of Read2 into 3-character ICD10 0 41 1 22340 TRUD mapping of Read2 into 3-character ICD10<p>ICD-10 codes, terms and text used by permission of WHO, from: International Statistical Classification of Diseases and Related Health Problems, Tenth Revision (ICD-10). Vols 1-3. Geneva, World Health Organization, 1992-2016.<p>Contains information from NHS Digital, licenced under the current version of the Open Government Licence available at www.nationalarchives.gov.uk/doc/open-government-licence/open-government-licence.htm.
1835 TRUD mapping of Read3 into 3-character ICD10 0 41 1 33284 TRUD mapping of Read3 into 3-character ICD10<p>ICD-10 codes, terms and text used by permission of WHO, from: International Statistical Classification of Diseases and Related Health Problems, Tenth Revision (ICD-10). Vols 1-3. Geneva, World Health Organization, 1992-2016.<p>Contains information from NHS Digital, licenced under the current version of the Open Government Licence available at www.nationalarchives.gov.uk/doc/open-government-licence/open-government-licence.htm.
1836 Partial mapping of ICD9 to ICD10 at 3-character level 0 41 1 2875 This encoding maps ICD9 (~C87~) codes onto the 3-character level of the ICD10 (~C19~) codes. It is not intended to be exhaustive and cases where the mapping is ambiguous have been omitted.<p>ICD-10 codes, terms and text used by permission of WHO, from: International Statistical Classification of Diseases and Related Health Problems, Tenth Revision (ICD-10). Vols 1-3. Geneva, World Health Organization, 1992-2016.
1862 Diagnosis route 0 11 1 6 Method of diagnosis
1965 Lost to follow-up 0 11 1 5 This field indicates the participants for whom it is believed to be impossible to fully complete data collection and the reason for this belief.
1970 Record providence 0 41 1 6 Indicates the provider/origin of Hes data records.
1990 Trail completion 0 11 1 1 Indicates that a participant did not complete a trail challenge.
2171 Source(s) of first reports of health outcomes 0 11 1 8 Data source(s) of each code mapped to 3-character ICD10
2226 LIMS data transfer route 0 11 1 3 This identifies the route whereby data from laboratory analysers reached the central UK Biobank LIMS (laboratory information management system) database. It's relevance is that it affects the interpretation of the time that an item of data was acquired, since the timestamp reflects the time that the data reached the LIMS system rather than when the actual measurement was done.
2730 Onset speed 0 11 1 4 Speed of onset
3432 UKB laboratory analysers 0 41 1 4 Analyser machines used at the UK Biobank laboratories.
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