Commit 4d95d9ee authored by Paul McCarthy's avatar Paul McCarthy 🚵
Browse files

Merge branch 'mnt/refresh_data_dictionaries' into 'master'

Mnt/refresh data dictionaries

Closes #7

See merge request !69
parents 31391cd5 852737d6
......@@ -2,8 +2,17 @@ FUNPACK changelog
=================
2.4.0 (Under development)
_________________________
2.4.0 (Thursday 26th November 2020)
___________________________________
Added
^^^^^
* New ``--ids_only`` option which causes only the subject IDs to be saved,
suitable for use with the ``--subject`` option in subsequent calls to
``funpack``.
Changed
......@@ -11,21 +20,17 @@ Changed
* Changed how binary subject selection expressions are evaluated when the
different variables have different numbers of columns.
* All internal UKB showcase data tables have been updated to their
latest versions.
* The node name for `Chapter V - Supplementary classification ...` in the ICD9
data table has been changed from `Chapter V` to `Chapter V sup` to avoid
collisions with the `Chapter V` node.
2.3.3 (Wednesday 5th October 2020)
----------------------------------
Added
^^^^^
* New ``--ids_only`` option which causes only the subject IDs to be saved,
suitable for use with the ``--subject`` option in subsequent calls to
``funpack``.
Changed
^^^^^^^
......
......@@ -6,7 +6,7 @@
#
__version__ = '2.3.3'
__version__ = '2.4.0'
"""The ``funpack`` versioning scheme roughly follows Semantic Versioning
conventions.
"""
......
......@@ -18,6 +18,8 @@ The following cleaning functions are available:
fillVisits
fillMissing
convertICD10Codes
flattenHierarchical
parseSpirometryData
makeNa
......
......@@ -78,6 +78,7 @@ encoding_id title availability coded_as structure num_members descript
102 inclusion status 0 11 1 2 Whether a participant was included in a particular subset
123 UK Biobank staff 0 11 1 1115 This is a pseudonymised index of the UK Biobank staff who have had authority to sign-off individual-level records which are included in the UK Biobank core repository. UK Biobank will not publish or reveal the actual identiites of staff.
165 Assay correction level 0 11 1 3 Indicates the type of assay correct that was applied to a biochemistry result.
169 Blood haplotypes 0 41 1 6 Blood haplotypes
170 Map co-ordinates 0 11 1 1 Special map co-ordinates
196 Result flags for sodium in urine assay 0 41 1 2 Result flags returned by sodium in urine assay when outside of device analytical range.
197 Result flags for potassium in urine assay 0 41 1 2 Result flags returned by potassium in urine assay when outside of device analytical range.
......@@ -121,17 +122,17 @@ encoding_id title availability coded_as structure num_members descript
237 HES coding for EPISTAT 0 11 1 3 HES coding for EPISTAT
238 HES coding for EPITYPE 0 11 1 6 HES coding for EPITYPE
239 HES coding for PCTCODE and GPPRPCT 0 41 1 417 HES coding for PCTCODE and GPPRPCT
240 OPCS4 operation codes 0 41 2 10928 OPCS4 codes used to specify medical procedures and operations in Health Episode Statistics records<p>The OPCS Classification of Interventions and Procedures, codes, terms and text is Crown copyright (2016) published by Health and Social Care Information Centre, also known as NHS Digital and licensed under the Open Government Licence available at www.nationalarchives.gov.uk/doc/open-government-licence/open-government-licence.htm.
240 OPCS4 operation codes 0 41 2 11288 OPCS4 codes used to specify medical procedures and operations in Health Episode Statistics records<p>The OPCS Classification of Interventions and Procedures, codes, terms and text is Crown copyright (2016) published by Health and Social Care Information Centre, also known as NHS Digital and licensed under the Open Government Licence available at www.nationalarchives.gov.uk/doc/open-government-licence/open-government-licence.htm.
241 SMR1b coding for ADMIMETH 0 41 1 22 SMR1b coding for ADMIMETH<p>It is included as part of ~C264~.
242 SMR1a coding for ADMIMETH 0 41 1 9 SMR1a coding for ADMIMETH<p>It is included as part of ~C264~.
243 SMR1b coding for ADMISORC 0 41 1 64 SMR1b coding for ADMISORC<p>It is included as part of ~C265~.
244 SMR1a coding for ADMISORC 0 41 1 4 SMR1a coding for ADMISORC<p>It is included as part of ~C265~.
245 SMR1b coding for CLASSPAT 0 41 1 8 SMR1b coding for CLASSPAT<p>It is included as part of ~C266~.
246 SMR1a coding for CLASSPAT 0 41 1 6 SMR1a coding for CLASSPAT<p>It is included as part of ~C266~.
247 SMR coding for DISDEST 0 41 1 64 SMR1a and SMR1b coding for DISDEST<p>It is included as part of ~C267~.
247 SMR coding for DISDEST 0 41 1 66 SMR1a and SMR1b coding for DISDEST<p>It is included as part of ~C267~.
248 SMR1b coding for DISMETH 0 41 1 19 SMR1b coding for DISMETH<p>It is included as part of ~C268~.
249 SMR1a coding for DISMETH 0 41 1 9 SMR1a coding for DISMETH<p>It is included as part of ~C268~.
250 SMR1b coding for TRETSPEF 0 41 1 59 SMR1b coding for TRETSPEF<p>It is included as part of ~C269~.
250 SMR1b coding for TRETSPEF 0 41 1 60 SMR1b coding for TRETSPEF<p>It is included as part of ~C269~.
251 SMR1a coding for TRETSPEF 0 41 1 44 SMR1a coding for TRETSPEF<p>It is included as part of ~C269~.
252 PEDW coding for ADMIMETH 0 41 1 20 PEDW coding for ADMIMETH<p>It is included as part of ~C264~.
253 PEDW coding for ADMISORC 0 41 1 22 PEDW coding for ADMISORC<p>It is included as part of ~C265~.
......@@ -142,15 +143,15 @@ encoding_id title availability coded_as structure num_members descript
258 PEDW coding for MAINSPEF 0 41 1 93 PEDW coding for MAINSPEF<p>It is included as part of ~C270~.
259 OPCS3 operation codes 0 41 2 1902 OPCS3 codes used to specify medical procedures and operations in Health Episode Statistics records.<p>The OPCS Classification of Interventions and Procedures, codes, terms and text is Crown copyright (2016) published by Health and Social Care Information Centre, also known as NHS Digital and licensed under the Open Government Licence available at www.nationalarchives.gov.uk/doc/open-government-licence/open-government-licence.htm.
260 PEDW coding for INTMANAG 0 41 1 6 PEDW coding for INTMANAG<p>It is included as part of ~C271~.
261 Death information source 0 11 1 5 Death information is derived from a variety of registries. This encoding identifies the source of particular records.
261 Death information source 0 11 1 7 Death information is derived from a variety of registries. This encoding identifies the source of particular records.
262 Cancer information source 0 11 1 5 Cancer information is derived from a variety of registries. This encoding identifies the source of particular records.
263 HES information source 0 11 1 9 Health episode statistics information is derived from a variety of registries. This encoding identifies the source of particular records.
263 HES information source 0 11 1 12 Health episode statistics information is derived from a variety of registries. This encoding identifies the source of particular records.
264 Unified recoding for ADMIMETH 0 11 2 42 Created by amalgamating members of ~C202~, ~C241~, ~C242~ and ~C252~.
265 Unified recoding for ADMISORC 0 11 2 50 Created by amalgamating members of ~C203~, ~C243~, ~C244~ and ~C253~.
266 Unified recoding for CLASSPAT 0 11 2 13 Created by amalgamating members of ~C208~, ~C245~, ~C246~ and ~C254~.
267 Unified recoding for DISDEST 0 11 2 49 Created by amalgamating members of ~C205~, ~C247~ and ~C255~.
267 Unified recoding for DISDEST 0 11 2 51 Created by amalgamating members of ~C205~, ~C247~ and ~C255~.
268 Unified recoding for DISMETH 0 11 2 19 Created by amalgamating members of ~C206~, ~C248~, ~C249~ and ~C256~.
269 Unified recoding for TRETSPEF 0 11 1 197 Created by amalgamating members of ~C211~, ~C250~, ~C251~ and ~C257~.
269 Unified recoding for TRETSPEF 0 11 1 199 Created by amalgamating members of ~C211~, ~C250~, ~C251~ and ~C257~.
270 Unified recoding for MAINSPEF 0 11 1 94 Created by amalgamating members of ~C210~ and ~C258~.
271 Unified recoding for INTMANAG 0 11 1 7 Created by amalgamating members of ~C209~ and ~C260~.
272 Outcome date flags 0 51 1 1 Special date values used to indicate imprecise or unknown data
......@@ -233,6 +234,7 @@ encoding_id title availability coded_as structure num_members descript
609 Mapping of self-reported medical conditions to 3-character ICD10 0 11 1 334 Mapping of self-reported medical conditions to 3-character ICD10
616 Happiness level 0 11 1 12 Happiness level on 10 point scale
620 Distension 0 11 1 12 Levels of distension
626 GP data provider 0 11 1 4 Data provider for GP information
634 Status with uncertain option 0 11 1 3 Status with uncertain option to allow for cases where situation cannot be resolved on available evidence.
682 Kinship level 0 11 1 4 Indicates the level of genetic kinship an individual appears to have to other participants
744 Antibiotics 0 11 1 1025 List used by UKB assessment centre nurses to code antibiotic treatments. This is a subset of ~C4~.
......@@ -252,10 +254,13 @@ encoding_id title availability coded_as structure num_members descript
809 INFO_tfMRI_imperfect 0 11 1 1 INFO_tfMRI_imperfect
810 INFO_dMRI_unusable 0 11 1 8 INFO_dMRI_unusable
811 INFO_dMRI_imperfect 0 11 1 1 INFO_dMRI_imperfect
819 lumped event dates 0 51 1 4 Pseudo dates used to rebadge erroneous and/or sensitive information.
819 lumped event dates 0 51 1 5 Pseudo dates used to rebadge erroneous and/or sensitive information.
831 Prominence of cause of death 0 11 1 2 Distinguishes between main and other causes of death
871 Frequency within week/month 0 11 1 8 How often an action is carried out
909 Measurement not returned 0 31 1 1 Used to indicate that an ultrasound measurement was not possible.
913 Days with pain 0 11 1 12 Days with pain in last 10 day period
925 HES operations level 0 11 1 2 Differentiates between main and other operations
926 HES diagnosis level 0 11 1 3 Distinguishes between types of diagnosis
946 Cigarette smoking amount 0 11 1 3 Non-numeric options for cigarette smoking
947 Reason for exclusion from genetic relatedness calculation 0 11 1 2 This coding gives the reason that some participants were excluded from calculations estimating the degree of genetic relatedness between persons in the dataset.
950 Frequency of effects 0 11 1 6 Graduated frequency of effects.
......@@ -272,6 +277,7 @@ encoding_id title availability coded_as structure num_members descript
1021 Yes/No/NA 0 11 1 3 Yes/No choice
1022 Yes/No/NA/PNA 0 11 1 4 Yes/No choice with option of not-applicable.
1101 Genomic data problems 0 11 1 1 Itemizes problems encountered processing genomic data.
1176 EMIS clinical unit coding 0 41 1 6 Special codes used to redact value units associated with EMIS GP clinical codes.
1200 ACE-coding1200 0 41 1 23 Artificial coding, generated after data collection
1201 ACE-coding1201 0 41 1 7 Artificial coding, generated after data collection
1202 ACE-coding1202 0 41 1 2 Artificial coding, generated after data collection
......@@ -302,15 +308,24 @@ encoding_id title availability coded_as structure num_members descript
1834 TRUD mapping of Read2 into 3-character ICD10 0 41 1 22340 TRUD mapping of Read2 into 3-character ICD10<p>ICD-10 codes, terms and text used by permission of WHO, from: International Statistical Classification of Diseases and Related Health Problems, Tenth Revision (ICD-10). Vols 1-3. Geneva, World Health Organization, 1992-2016.<p>Contains information from NHS Digital, licenced under the current version of the Open Government Licence available at www.nationalarchives.gov.uk/doc/open-government-licence/open-government-licence.htm.
1835 TRUD mapping of Read3 into 3-character ICD10 0 41 1 33284 TRUD mapping of Read3 into 3-character ICD10<p>ICD-10 codes, terms and text used by permission of WHO, from: International Statistical Classification of Diseases and Related Health Problems, Tenth Revision (ICD-10). Vols 1-3. Geneva, World Health Organization, 1992-2016.<p>Contains information from NHS Digital, licenced under the current version of the Open Government Licence available at www.nationalarchives.gov.uk/doc/open-government-licence/open-government-licence.htm.
1836 Partial mapping of ICD9 to ICD10 at 3-character level 0 41 1 2875 This encoding maps ICD9 (~C87~) codes onto the 3-character level of the ICD10 (~C19~) codes. It is not intended to be exhaustive and cases where the mapping is ambiguous have been omitted.<p>ICD-10 codes, terms and text used by permission of WHO, from: International Statistical Classification of Diseases and Related Health Problems, Tenth Revision (ICD-10). Vols 1-3. Geneva, World Health Organization, 1992-2016.
1853 COVID19 test locations 0 11 1 39 Locations/methods used to generate samples for COVID19 testing.
1854 Test result 0 11 1 2 Result of a binary test
1855 Origin of test sample 0 11 1 2 Indicates where a participant was believed to be (or be doing) when their sample was taken.
1856 COVID19 testing laboratories 0 11 1 141 Laboratories performing tests for COVID19
1862 Diagnosis route 0 11 1 6 Method of diagnosis
1965 Lost to follow-up 0 11 1 5 This field indicates the participants for whom it is believed to be impossible to fully complete data collection and the reason for this belief.
1970 Record providence 0 41 1 6 Indicates the provider/origin of Hes data records.
1990 Trail completion 0 11 1 1 Indicates that a participant did not complete a trail challenge.
2171 Source(s) of first reports of health outcomes 0 11 1 8 Data source(s) of each code mapped to 3-character ICD10
2226 LIMS data transfer route 0 11 1 3 This identifies the route whereby data from laboratory analysers reached the central UK Biobank LIMS (laboratory information management system) database. It's relevance is that it affects the interpretation of the time that an item of data was acquired, since the timestamp reflects the time that the data reached the LIMS system rather than when the actual measurement was done.
2360 EMIS clinical value coding 0 31 1 6 Special codes used to redact values associated with EMIS GP clinical codes.<p>Please note that floating-point format appears as scientific notation in the Showcase and obscures small differences between the individual codes. These differences are visible when the encoding is downloaded.
2730 Onset speed 0 11 1 4 Speed of onset
3175 GP code type 0 11 1 11 Coding system used to classify GP clinical and prescription data
3311 Requesting organisation 0 11 1 15 Organisations responsible for requesting blood tests.
3432 UKB laboratory analysers 0 41 1 4 Analyser machines used at the UK Biobank laboratories.
4214 dm+d special codes 0 41 1 2 Special values used to recode missing dm+d codes
4917 Reportability 0 11 1 5 Reportability of assay results
4982 Block count exception 0 11 1 1 Used to indicate cases where block count is not known.
5001 Answer to FI1 0 11 1 5 List of possible answers to online fluid intelligence question FI1.
5002 Answers to FI2 0 11 1 5 List of possible answers to online fluid intelligence question FI2.
5003 Answers to FI3 0 11 1 5 List of possible answers to online fluid intelligence question FI3.
......@@ -328,6 +343,7 @@ encoding_id title availability coded_as structure num_members descript
5159 Mood scale 0 11 1 5 Scale of answers to mood questions.
5160 Input device/method 0 11 1 5 Method of data input used by participant
5178 Pointing method 0 11 1 5 Method used by participants to point-to/select/click a control on a screen.
5702 TPP GP clinical value coding 0 31 1 2 Special codes used to redact values associated with sensitive TPP GP clinical codes.
6312 Tower responses 0 11 1 6 Responses were integers in the range 1-6.
6314 Word/picture groups 0 11 1 340 Relates indices of word/picture groups to the actual words displayed
6315 Position of picture on screen 0 11 1 4 Index relating each picture to their position on screen
......@@ -343,8 +359,22 @@ encoding_id title availability coded_as structure num_members descript
6525 Paired associates for "pretty" 0 11 1 5 Paired associates for "pretty"
6536 Paired associates for "tiny" 0 11 1 5 Paired associates for "tiny"
6547 Paired associates for "new" 0 11 1 5 Paired associates for "new"
7001 Critical care unit function 0 11 1 13 Critical care unit function
7002 Critical care unit bed configuration 0 11 1 4 Critical care unit bed configuration
7003 Critical care adult admission type 0 11 1 6 Critical care adult admission type
7004 Critical care adult admission source 0 11 1 5 Critical care adult admission source
7005 Critical care source location 0 11 1 11 Critical care source location
7006 Critical care days 0 11 1 2 Critical care days
7009 Critical care discharge status 0 11 1 11 Critical care discharge status
7010 Critical care discharge destination 0 11 1 6 Critical care discharge destination
7011 Critical care discharge destination location 0 11 1 9 Critical care discharge destination location
7012 Critical care APC relationship 0 11 1 14 Critical care APC relationship
7128 CTV3 clinical codes 0 41 1 332115 CTV3 clinical codes. Redacted sensitive/potentially identifying codes are represented by negative values.
7310 Initial infection 0 11 1 7 Infections diagnosed alongside IBS
7618 Antigen QC 0 11 1 2 Description of antigen quality control observation.
7678 EMIS local script codes 0 41 1 6995 Local codes created by EMIS for use in GP prescription data. Codes that have been redacted are represented by negative values.
7689 EMIS local clinical codes 0 41 1 19280 Local codes created by EMIS for use in GP clinical data. Codes that have been redacted are represented by negative values.
8708 TPP local codes 0 41 1 5683 Codes created by TPP for use in GP clinical data. Redacted sensitive/potentially identifying codes are represented by negative values.
22000 Genotyping array 0 11 2 108 This encoding categorises the particular types of arrays used to measure genotypes in UK Biobank participants.
100001 WEBDIET-coding100000001 0 11 1 3 Coding for online diet questionnaire
100002 WEBDIET-coding100000002 0 11 1 5 Coding for online diet questionnaire
......
This diff is collapsed.
......@@ -20,4 +20,4 @@ coding meaning node_id parent_id selectable
3004 Any other Asian background 3004 3 Y
4001 Caribbean 4001 4 Y
4002 African 4002 4 Y
4003 Any other Black background 4003 4 Y
4003 Any other Black background 4003 4 Y
\ No newline at end of file
coding meaning node_id parent_id selectable
-1 gastrointestinal cancer 1002 0 N
-1 other cancer 1011 0 N
-1 haematological malignancy 1009 0 N
-1 genital tract cancer 1008 0 N
-1 neurological system cancer 1005 0 N
-1 ear/nose/throat cancer 1001 0 N
-1 other cancer 1011 0 N
-1 genital tract cancer 1008 0 N
-1 gastrointestinal cancer 1002 0 N
-1 urinary tract cancer 1006 0 N
-1 neurological system cancer 1005 0 N
1001 lung cancer 1003 0 Y
1002 breast cancer 1007 0 Y
1003 skin cancer 1010 0 Y
......@@ -86,4 +86,4 @@ coding meaning node_id parent_id selectable
1085 bone metastases / bony secondaries 1097 1079 Y
1086 appendix cancer 1098 1030 Y
1087 fallopian tube cancer 1099 1045 Y
1088 malignant insulinoma 1100 1034 Y
1088 malignant insulinoma 1100 1034 Y
\ No newline at end of file
coding meaning node_id parent_id selectable
-1 investigations +/- biopsy 1571 1003 N
-1 amputation 1488 1071 N
-1 operation by system 1003 0 N
-1 respiratory/ent 1072 1003 N
-1 gynaecology/breast 1079 1003 N
-1 neurosurgery 1521 1076 N
-1 haematology/dermatology 1078 1003 N
-1 musculoskeletal/trauma 1077 1003 N
-1 other urological surgery (male) 1231 1074 N
-1 operation by system 1003 0 N
-1 neurology/eye 1076 1003 N
-1 renal/urology 1074 1003 N
-1 endocrine 1075 1003 N
-1 gastrointestinal/abdominal 1073 1003 N
-1 cardiovascular 1071 1003 N
-1 thoracotomy/chest/lung surgery 1493 1072 N
-1 neurosurgery 1521 1076 N
-1 amputation 1488 1071 N
-1 musculoskeletal/trauma 1077 1003 N
-1 respiratory/ent 1072 1003 N
-1 other urological surgery (male) 1231 1074 N
-1 gynaecology/breast 1079 1003 N
-1 lower gi surgery 1510 1073 N
-1 endocrine 1075 1003 N
-1 cardiovascular 1071 1003 N
-1 upper gi surgery 1498 1073 N
-1 renal/urology 1074 1003 N
1069 heart surgery 1086 1071 Y
1070 coronary angioplasty (ptca) +/- stent 1087 1071 Y
1071 other arterial surgery/revascularisation procedures 1088 1071 Y
......@@ -268,4 +268,4 @@ coding meaning node_id parent_id selectable
1618 renal biopsy / kidney biopsy 1679 1675 Y
1619 lung biopsy 1680 1675 Y
1620 lumbar puncture 1681 1571 Y
1621 cystoscopy 1682 1667 Y
1621 cystoscopy 1682 1667 Y
\ No newline at end of file
coding meaning node_id parent_id selectable
-1 renal/urology 1074 1003 N
-1 tropical & travel-related infections 1762 1495 N
-1 dermatology 1510 1078 N
-1 neurology/eye/psychiatry 1076 1003 N
-1 endocrine/diabetes 1075 1003 N
-1 musculoskeletal/trauma 1077 1003 N
-1 neurology 1265 1076 N
-1 haematology/dermatology 1078 1003 N
-1 illness by system 1003 0 N
-1 gastrointestinal/abdominal 1073 1003 N
-1 bowel problem 1155 1073 N
-1 gynaecology/breast 1079 1003 N
-1 respiratory/ent 1072 1003 N
-1 haematology/dermatology 1078 1003 N
-1 musculoskeletal/trauma 1077 1003 N
-1 bacterial infection 1758 1495 N
-1 fracture upper limb & shoulder 1702 1695 N
-1 obstetric problem 1621 1079 N
-1 immunological/systemic disorders/infections 1080 1003 N
-1 haematology 1502 1078 N
-1 dermatology 1510 1078 N
-1 other urological problem (male) 1231 1074 N
-1 cerebrovascular disease 1083 1071 N
-1 bowel problem 1155 1073 N
-1 fracture upper limb & shoulder 1702 1695 N
-1 other fractures 1713 1695 N
-1 fracture pelvis & lower limb 1720 1695 N
-1 neurology 1265 1076 N
-1 cardiovascular 1071 1003 N
-1 fracture head & neck 1696 1695 N
-1 fracture 1695 1077 N
-1 viral infection 1747 1495 N
-1 substance abuse/dependency 1460 1269 N
-1 fracture pelvis & lower limb 1720 1695 N
-1 infections 1495 1080 N
-1 renal/urology 1074 1003 N
-1 substance abuse/dependency 1460 1269 N
-1 other fractures 1713 1695 N
-1 endocrine/diabetes 1075 1003 N
-1 ent disorder/not cancer 1466 1072 N
-1 fracture head & neck 1696 1695 N
-1 other urological problem (male) 1231 1074 N
-1 cardiovascular 1071 1003 N
-1 illness by system 1003 0 N
-1 respiratory/ent 1072 1003 N
-1 gastrointestinal/abdominal 1073 1003 N
-1 bacterial infection 1758 1495 N
-1 tropical & travel-related infections 1762 1495 N
-1 fracture 1695 1077 N
1065 hypertension 1081 1071 Y
1066 heart/cardiac problem 1082 1071 Y
1067 peripheral vascular disease 1084 1071 Y
......@@ -241,12 +241,12 @@ coding meaning node_id parent_id selectable
1438 polycythaemia vera 1493 1507 Y
1439 hiv/aids 1748 1747 Y
1439 hiv/aids 1496 1495 Y
1440 tuberculosis 1497 1495 Y
1440 tuberculosis (tb) 1761 1758 Y
1440 tuberculosis 1497 1495 Y
1441 malaria 1498 1495 Y
1441 malaria 1763 1762 Y
1442 helicobacter pylori 1499 1495 Y
1442 helicobacter pylori 1760 1758 Y
1442 helicobacter pylori 1499 1495 Y
1443 schistosomiasis/bilharzia 1764 1762 Y
1443 schistosomiasis 1500 1495 Y
1445 clotting disorder/excessive bleeding 1503 1502 Y
......@@ -477,4 +477,4 @@ coding meaning node_id parent_id selectable
1680 bowen's disease 1776 1510 Y
1681 hydatiform mole 1777 1391 Y
1682 benign insulinoma 1778 1075 Y
1683 benign neuroma 1779 1489 Y
1683 benign neuroma 1779 1489 Y
\ No newline at end of file
......@@ -14437,8 +14437,8 @@ U068 U06.8 Emergency use of U06.8 14435 14426 Y
U069 U06.9 Emergency use of U06.9 14436 14426 Y
U07 U07 Emergency use of U07 14437 284 N
U070 U07.0 Emergency use of U07.0 14438 14437 Y
U071 U07.1 Emergency use of U07.1 14439 14437 Y
U072 U07.2 Emergency use of U07.2 14440 14437 Y
U071 U07.1 COVID-19 virus identified 14439 14437 Y
U072 U07.2 COVID-19 virus not identified 14440 14437 Y
U073 U07.3 Emergency use of U07.3 14441 14437 Y
U074 U07.4 Emergency use of U07.4 14442 14437 Y
U075 U07.5 Emergency use of U07.5 14443 14437 Y
......@@ -19152,4 +19152,4 @@ Z992 Z99.2 Dependence on renal dialysis 19150 19147 Y
Z993 Z99.3 Dependence on wheelchair 19151 19147 Y
Z994 Z99.4 Dependence on artificial heart 19152 19147 Y
Z998 Z99.8 Dependence on other enabling machines and devices 19153 19147 Y
Z999 Z99.9 Dependence on unspecified enabling machine and device 19154 19147 Y
Z999 Z99.9 Dependence on unspecified enabling machine and device 19154 19147 Y
\ No newline at end of file
......@@ -26406,4 +26406,4 @@ coding meaning node_id parent_id selectable
81131266 Worker, process (textile mfr: textile finishing) 81131266 8113 Y
81131267 Worker, room, card 81131267 8113 Y
81131268 Worker, rope (rope, twine mfr) 81131268 8113 Y
81131269 Wringman 81131269 8113 Y
81131269 Wringman 81131269 8113 Y
\ No newline at end of file
......@@ -106,4 +106,4 @@ coding meaning node_id parent_id selectable
94 Batch_b094 94 2000 Y
95 Batch_b095 95 2000 Y
1000 BiLEVE 1000 0 Y
2000 Axiom 2000 0 Y
2000 Axiom 2000 0 Y
\ No newline at end of file
This diff is collapsed.
......@@ -1900,4 +1900,4 @@ Chapter XI Chapter XI - Female genital organs (670-730) 11 0 N
Chapter XII Chapter XII - Obstetrics (740-770) 12 0 N
Chapter XIII Chapter XIII - Orthopaedic (780-870) 13 0 N
Chapter XIV Chapter XIV - Peripheral vessels, skin and subcutaneous tissue (880-930) 14 0 N
Chapter XV Chapter XV - Other surgical procedures (941-990) 15 0 N
Chapter XV Chapter XV - Other surgical procedures (941-990) 15 0 N
\ No newline at end of file
......@@ -40,4 +40,4 @@ coding meaning node_id parent_id selectable
6002 Deferred admission: Hospital delay 6002 6000 Y
7000 Other admission 7000 0 Y
8000 Not applicable 8000 0 Y
9000 Not known 9000 0 Y
9000 Not known 9000 0 Y
\ No newline at end of file
......@@ -26,7 +26,7 @@ coding meaning node_id parent_id selectable
5009 Transfer from another Health Care Provider - Hospital at Home 5009 5000 Y
6000 Transfer within NHS provider 6000 0 Y
6001 Transfer within NHS provider: general ward, young physically disabled, A&E 6001 6000 Y
6002 Transfer to other NHS provider: Obstetrics 6002 6000 Y
6002 Transfer within NHS provider: Obstetrics 6002 6000 Y
6003 Transfer within NHS provider: psychiatry, learning disabilities 6003 6000 Y
6004 Transfer within NHS provider: Surgical specialty 6004 6000 Y
6005 Transfer within NHS provider: Medical specialty 6005 6000 Y
......@@ -48,4 +48,4 @@ coding meaning node_id parent_id selectable
10002 Other admission source: Admission of foundling 10002 10000 Y
10003 Other admission source: Births in or on the way to hospital 10003 10000 Y
11000 Not applicable 11000 0 Y
12000 Not known 12000 0 Y
12000 Not known 12000 0 Y
\ No newline at end of file
......@@ -11,4 +11,4 @@ coding meaning node_id parent_id selectable
3000 Regular day attender 3000 0 Y
4000 Regular night attender 4000 0 Y
5000 Expectant mothers using delivery facilities 5000 0 Y
6000 Not applicable 6000 0 Y
6000 Not applicable 6000 0 Y
\ No newline at end of file
......@@ -24,6 +24,7 @@ coding meaning node_id parent_id selectable
5006 Transfer to other NHS provider: GP 5006 5000 Y
5007 Transfer to other NHS provider: Geriatrics 5007 5000 Y
5008 Transfer to other NHS provider: Orthopaedics 5008 5000 Y
5009 Transfer to other NHS Provider: Hospital at Home 5009 5000 Y
6000 Transfer within NHS provider 6000 0 Y
6001 Transfer within NHS provider: General ward, young physically disabled, A&E 6001 6000 Y
6002 Transfer within NHS provider: Obstetrics 6002 6000 Y
......@@ -33,6 +34,7 @@ coding meaning node_id parent_id selectable
6006 Transfer within NHS provider: GP 6006 6000 Y
6007 Transfer within NHS provider: Geriatrics 6007 6000 Y
6008 Transfer within NHS provider: Orthopaedics 6008 6000 Y
6009 Transfer within the same Provider: Hospital at Home 6009 6000 Y
7000 Nursing, residential care, group home 7000 0 Y
7001 Nursing, residential care, group home: NHS 7001 7000 Y
7002 Nursing, residential care, group home: Local Authoritory 7002 7000 Y
......@@ -47,4 +49,4 @@ coding meaning node_id parent_id selectable
10002 Other discharge destination: Discharge of foundling 10002 10000 Y
11000 Not applicable 11000 0 Y
11001 Not applicable: patient died 11001 11000 Y
12000 Not known 12000 0 Y
12000 Not known 12000 0 Y
\ No newline at end of file
......@@ -17,4 +17,4 @@ coding meaning node_id parent_id selectable
3003 Patient death: Whilst on pass 3003 3000 Y
3004 Patient death: Stillbirth 3004 3000 Y
4000 Not applicable 4000 0 Y
5000 Not known 5000 0 Y
5000 Not known 5000 0 Y
\ No newline at end of file
coding meaning node_id parent_id selectable
-1 other cancer 1011 0 N
-1 haematological malignancy 1009 0 N
-1 neurological system cancer 1005 0 N
-1 urinary tract cancer 1006 0 N
-1 genital tract cancer 1008 0 N
-1 ear/nose/throat cancer 1001 0 N
-1 genital tract cancer 1008 0 N
-1 gastrointestinal cancer 1002 0 N
-1 haematological malignancy 1009 0 N
-1 other cancer 1011 0 N
-1 urinary tract cancer 1006 0 N
1001 lung cancer 1003 1095 Y
1002 breast cancer 1007 0 Y
1003 skin cancer 1010 0 Y
......@@ -87,4 +87,4 @@ coding meaning node_id parent_id selectable
1086 appendix cancer 1098 1030 Y
1087 fallopian tube cancer 1099 1045 Y
1088 malignant insulinoma 1100 1034 Y
99999 unclassifiable 99999 0 N
99999 unclassifiable 99999 0 N
\ No newline at end of file
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment